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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctttttattatatgtataatccttagttttggtacaattctactttttccatgatataagtttgctaatatactgcttctggtgtgtgtctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAAGACCTCTTAAAGCAGAAAATTCACCTCCATTTACGACTGCAATGATAAT

Basic information

species Zea mays
transcript GRMZM2G094083_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78104759|gb|DV523177.1|DV523177
EST:     TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG                         GCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAGgtagtaatct ... ctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
EST: gi|60398594|gb|DN231410.1|DN231410
EST:     TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG                         GCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAGgtagtaatct ... ctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
EST: gi|149077555|gb|EE166252.2|EE166252
EST:     TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG                         GCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAGgtagtaatct ... ctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
EST: gi|76013072|gb|DT940242.1|DT940242
EST:     TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG                         GCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAGgtagtaatct ... ctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
EST: gi|88755914|gb|DY540055.1|DY540055
EST:     TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG                         GCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCCTTGAAACTGTAT
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAGgtagtaatct ... ctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTAT
EST: gi|88755951|gb|DY540092.1|DY540092
EST:     TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG                         GCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCAT
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAGgtagtaatct ... ctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCAT
EST: gi|148945759|gb|EC891040.2|EC891040
EST:     TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG                         GCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAGgtagtaatct ... ctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccatgatataagtttgctaatatactgcttctggtgtgtgtctcttttcagGCTTCAATGCAGCAGTTGCTGGGTGCTTCTTTGCCATTGAAACTGTATTAAGACCTCTTAAAGCAGAAAATTCACCTCCATTTACGACTGCAATGATAAT
                  tgctaat  putative branch site (score: 2)
                                          tgtctcttttc  putative PPT
         atataagttt  TA-rich tract