1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtagaccatctagcatttagggtcgttggcattcttcatatgcctgatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
species | Zea mays |
transcript | GRMZM2G094051_T06 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211439886|gb|FL309186.1|FL309186
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211381235|gb|FL355200.1|FL355200
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211197410|gb|FL309893.1|FL309893
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211467480|gb|FL327940.1|FL327940
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211099200|gb|FL356880.1|FL356880
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211430944|gb|FL367566.1|FL367566
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211331288|gb|FL346026.1|FL346026
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGNTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|19350866|gb|BM895398.1|BM895398
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|76281808|gb|DV021376.1|DV021376
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211467080|gb|FL315617.1|FL315617
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGNTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211369599|gb|FL314676.1|FL314676
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTEST: gi|19350865|gb|BM895397.1|BM895397
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTT
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211425293|gb|FL350052.1|FL350052
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGWATACGATGCCCAG GAGAAGGAANTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211419805|gb|FL340213.1|FL340213
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGNTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211489662|gb|FL352063.1|FL352063
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|31558661|gb|CD527873.1|CD527873
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211522433|gb|FL327538.1|FL327538
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211262500|gb|FL327821.1|FL327821
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACT-GTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211430817|gb|FL361882.1|FL361882
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211489013|gb|FL325724.1|FL325724
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211365538|gb|FL366724.1|FL366724
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|18964888|gb|BM661267.1|BM661267
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTA-GCGCGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211479805|gb|FL307417.1|FL307417
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCEST: gi|211427800|gb|FL348316.1|FL348316
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
gatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
gcctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaccatctagcatttagggtcgttggcattcttcatatgcctgatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT