Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagaccatctagcatttagggtcgttggcattcttcatatgcctgatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG

Basic information

species Zea mays
transcript GRMZM2G094051_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 2
gtagaccatctagcat-ttagggtcgttggcattcttcatatgcctgatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
||||    |     || |||     ||| ||| ||   | |      || | |    | | |  |||  ||  |   | || |||  | ||    |||||||||||||| |||||||| |||||||||||||| ||  |||||||||||||||||||||| ||||| | |||| |||| ||||||||||| ||||| ||
gtagttgcttatatatgttaaaactgttcgcagtcaataaaaattgaataagaattgagcagcctgttgtactt-cattctaatgtcggtgtgatgagcagGAGAAGGAGCTGGTGCAACTTAAGCGTGAGGCTCGGATGAAGGGTGGTTTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGG

upper sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 2
gtagaccatctagcatttagggtcgttggcattcttcatatg------cctgatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
        | |||    |  | ||||||||||| ||||   |      |||     ||  || |       | ||   | | |  | | |    || |    |||||||||||| || |||||||| ||||||||||| ||  |||||||||| ||||| ||||| ||||| || || || || ||||||||||||||||| ||
------agtgtagttaatctgttcgttggcattgttcaagggatagttcctttctgaaatgatcattatctttttgaatttattgtgacgattgtgttctttgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGATGAAGGGTGGGTTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211467480|gb|FL327940.1|FL327940
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211381235|gb|FL355200.1|FL355200
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211489662|gb|FL352063.1|FL352063
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|71311932|gb|DR792458.1|DR792458
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211162458|gb|FL355955.1|FL355955
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211094483|gb|FL367316.1|FL367316
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211483249|gb|FL325697.1|FL325697
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|78112606|gb|DV531000.1|DV531000
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|60349187|gb|DN216160.1|DN216160
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211425293|gb|FL350052.1|FL350052
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGWATACGATGCCCAG                         GAGAAGGAANTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211365538|gb|FL366724.1|FL366724
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211197410|gb|FL309893.1|FL309893
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|31611989|gb|CD568611.1|CD568611
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|67011751|gb|CO440500.1|CO440500
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|19350866|gb|BM895398.1|BM895398
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211522433|gb|FL327538.1|FL327538
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|60352654|gb|DN219627.1|DN219627
EST:     CTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: CTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|37397315|gb|CF635954.1|CF635954
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|60355362|gb|DN222335.1|DN222335
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211308607|gb|FL359637.1|FL359637
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211262500|gb|FL327821.1|FL327821
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACT-GTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211260993|gb|FL365787.1|FL365787
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211439886|gb|FL309186.1|FL309186
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|60349587|gb|DN216560.1|DN216560
EST:     CAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: CAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211374992|gb|FL316972.1|FL316972
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211314169|gb|FL331838.1|FL331838
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211154101|gb|FL335997.1|FL335997
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGNTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|5915417|gb|AW053058.1|AW053058
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211041714|gb|FL025837.1|FL025837
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211467080|gb|FL315617.1|FL315617
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGNTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|71311933|gb|DR792459.1|DR792459
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|60357813|gb|DN224786.1|DN224786
EST:     CGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: CGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|19350865|gb|BM895397.1|BM895397
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211430944|gb|FL367566.1|FL367566
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211475326|gb|FL336903.1|FL336903
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|60352160|gb|DN219133.1|DN219133
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|71439147|gb|DR820197.1|DR820197
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|19058687|gb|BM737354.1|BM737354
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGG-GCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGG-TTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|31611990|gb|CD568612.1|CD568612
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|60354480|gb|DN221453.1|DN221453
EST:     GAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: GAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|31558661|gb|CD527873.1|CD527873
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|28873880|gb|CB329810.1|CB329810
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211427800|gb|FL348316.1|FL348316
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211401347|gb|FL317344.1|FL317344
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGNTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211419805|gb|FL340213.1|FL340213
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGNTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|93016887|gb|EB642407.1|EB642407
EST:     CTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: CTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211369599|gb|FL314676.1|FL314676
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTT
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTT
EST: gi|50323404|gb|CO518530.1|CO518530
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211479805|gb|FL307417.1|FL307417
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|101392068|gb|EB817961.1|EB817961
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|76281808|gb|DV021376.1|DV021376
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|33094604|gb|CF054598.1|CF054598
EST:     GGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: -GCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|5108253|gb|AI739966.1|AI739966
EST:     CGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: CGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|9255094|gb|BE345562.1|BE345562
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211528037|gb|FL311006.1|FL311006
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211055938|gb|FL348468.1|FL348468
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|28909548|gb|CB330985.1|CB330985
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211489013|gb|FL325724.1|FL325724
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211108757|gb|FL337429.1|FL337429
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211397106|gb|FL357146.1|FL357146
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|28910315|gb|CB331377.1|CB331377
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|9731382|gb|BE510134.1|BE510134
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|120480075|gb|EH210722.1|EH210722
EST:     GCAAAGCAGTACGCCGA-GAATACGATG-CCA-                         GAGAA-GAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: GCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|18964888|gb|BM661267.1|BM661267
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTA-GCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|31359055|gb|CD443412.1|CD443412
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|101401382|gb|EB822368.1|EB822368
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211430817|gb|FL361882.1|FL361882
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|28930957|gb|CB334318.1|CB334318
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211364904|gb|FL335329.1|FL335329
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
EST: gi|211099200|gb|FL356880.1|FL356880
EST:     AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG                         GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC
genomic: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1436

GAAGAAGGAGAAGGCCCTAGTCGAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1778

GAAGAAGGAGAAGGCCCTAGTCGAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 931

GAAGAAGGAGAAGGCCCTAGTCGAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 504

GAAGAAGGAGAAGGCCCTAGTCGAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAGgtcagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
 gcctgat  putative branch site (score: 504)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagaccatctagcatttagggtcgttggcattcttcatatgcctgatgaaagagaacccggatgtgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - -aaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctt