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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttgtcttcttctgcttcttttatttactcccttctccttttatccttgtagccctttttaactgaccacacagttagcctgagtgtaggagggggctaaaataaactgtgctcttttgttcataggatggcagcacatacagttccagtagggacctatactcatttttctctccttgttgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG

Basic information

species Zea mays
transcript GRMZM2G093359_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211519253|gb|FK974838.1|FK974838
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514527|gb|FK974805.1|FK974805
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211519243|gb|FK974828.1|FK974828
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|149090120|gb|EE179418.2|EE179418
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516881|gb|FK974817.1|FK974817
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211153846|gb|FK974847.1|FK974847
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211519248|gb|FK974833.1|FK974833
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514524|gb|FK974802.1|FK974802
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAG
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAG
EST: gi|211516878|gb|FK974814.1|FK974814
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211512169|gb|FK974787.1|FK974787
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAG
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAG
EST: gi|211516887|gb|FK974823.1|FK974823
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAA
EST: gi|149089319|gb|EE178541.2|EE178541
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211519241|gb|FK974826.1|FK974826
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTG
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTG
EST: gi|211514522|gb|FK974800.1|FK974800
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGGAGGAATAAATGTCTT
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTG-AGGAATAAATGTCTT
EST: gi|211153843|gb|FK974844.1|FK974844
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211512166|gb|FK974784.1|FK974784
EST:     CCGACCGGCGTGNAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGANCA-CGAAGCCCTGAGGAA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGA-CAACGAAGCCCTGAGGAA
EST: gi|149008951|gb|EE041170.2|EE041170
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516884|gb|FK974820.1|FK974820
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211126136|gb|FL125778.1|FL125778
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGAC
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGAC
EST: gi|29168004|gb|CB411264.1|CB411264
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211153842|gb|FK974843.1|FK974843
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCNCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211153845|gb|FK974846.1|FK974846
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|149104775|gb|EE290237.2|EE290237
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|86466218|gb|DY232591.1|DY232591
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514525|gb|FK974803.1|FK974803
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCYACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516888|gb|FK974824.1|FK974824
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211512173|gb|FK974791.1|FK974791
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211519250|gb|FK974835.1|FK974835
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGANCA-CGAAGCCCTGAGGGATAAATGTCTT
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGA-CAACGAAGCCCTGAGGAATAAATGTCTT
EST: gi|211512171|gb|FK974789.1|FK974789
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514523|gb|FK974801.1|FK974801
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514526|gb|FK974804.1|FK974804
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|149094603|gb|EE180134.2|EE180134
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|101398071|gb|EB820910.1|EB820910
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516883|gb|FK974819.1|FK974819
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|93015898|gb|EB641418.1|EB641418
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514531|gb|FK974809.1|FK974809
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211512177|gb|FK974795.1|FK974795
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCGTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516875|gb|FK974811.1|FK974811
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516879|gb|FK974815.1|FK974815
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211519246|gb|FK974831.1|FK974831
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACTCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTTACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516886|gb|FK974822.1|FK974822
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514530|gb|FK974808.1|FK974808
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTG
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTG
EST: gi|31350712|gb|CD435069.1|CD435069
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211519251|gb|FK974836.1|FK974836
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGA
EST: gi|211512168|gb|FK974786.1|FK974786
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514532|gb|FK974810.1|FK974810
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514520|gb|FK974798.1|FK974798
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211153840|gb|FK974841.1|FK974841
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211512170|gb|FK974788.1|FK974788
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGC-AGTCTTGCGTGACAACGAA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAA
EST: gi|31355275|gb|CD439632.1|CD439632
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211519245|gb|FK974830.1|FK974830
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|71424525|gb|DR806344.1|DR806344
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211153841|gb|FK974842.1|FK974842
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|148983250|gb|EE029217.2|EE029217
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514529|gb|FK974807.1|FK974807
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211514528|gb|FK974806.1|FK974806
EST:     CCGACCGGCGTGGARGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|89253028|gb|DY624814.1|DY624814
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211516880|gb|FK974816.1|FK974816
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA
EST: gi|211512167|gb|FK974785.1|FK974785
EST:     CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG                         CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTMTTA
genomic: CCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 47 (downstream exon)
Score: 59

GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 44

GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 34

GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 40

GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAGgttcttgtct ... tgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatacagttccagtagggacctatactcatttttctctccttgttgcttttcagCCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG
                        tactcatttttctctc  CT-rich tract
                           tcattttt  TA-rich tract