1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agttaaggtgaaatgtaaggcctagtgtaatcaaacttgtgcataacattcgacacatagctatcatgtgatagttattataacatctgtaattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGCTGGAATTATATGCGG
species | Zea mays |
transcript | GRMZM2G093239_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAG TGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGEST: gi|71427511|gb|DR808561.1|DR808561
genomic: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAGgttggtgcgc ... aattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAG
EST: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAG TGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGEST: gi|71318004|gb|DR795761.1|DR795761
genomic: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAGgttggtgcgc ... aattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAG
EST: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAG TGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGEST: gi|71431088|gb|DR812138.1|DR812138
genomic: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAGgttggtgcgc ... aattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAG
EST: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAG TGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGEST: gi|76294388|gb|DV033956.1|DV033956
genomic: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAGgttggtgcgc ... aattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAG
EST: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAG TGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGEST: gi|71434979|gb|DR816029.1|DR816029
genomic: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAGgttggtgcgc ... aattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAG
EST: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAG TGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAG
genomic: CTCCTCCGGCGCATCGACGGCGGCAGCGCCCAGAGCACGCCCAGCAACAGgttggtgcgc ... aattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAG
acattcgacacatagctatcatgtgatagttattataacatctgtaattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGCTGGAATTATATGCGG
ttataac putative branch site (score: 25)
atagttattataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttaaggtgaaatgtaaggcctagtgtaatcaaacttgtgcataacattcgacacatagctatcatgtgatagttattataacatctgtaattgatcagTGGAAGGTGGGCTCCCTCTCCGGTACATGCTATACTCTCCGAGGCAGACAGCTGGAATTATATGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA