1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ataaaacaatatttctgacagtgatacttattcgtttaggaacttatgtaatgatgaaacagaagctcactcttattaatctctttgttttaccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
species | Zea mays |
transcript | GRMZM2G092991_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTA TGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGEST: gi|211454415|gb|FL061604.1|FL061604
genomic: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTAgtaagtgtca ... taccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCG
EST: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTA TGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGEST: gi|211452297|gb|FL061602.1|FL061602
genomic: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTAgtaagtgtca ... taccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCG
EST: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTA TGATTCTAGGCGAGGTAGCCAATYTTGCAGCATATGCATTTGCCCCTGCCG
genomic: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTAgtaagtgtca ... taccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCG
atgtaatgatgaaacagaagctcactcttattaatctctttgttttaccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
tattaat putative branch site (score: 2)
tctctttgttttacct CT-rich tract
ttattaatctcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaacaatatttctgacagtgatacttattcgtttaggaacttatgtaatgatgaaacagaagctcactcttattaatctctttgttttaccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT