1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagaacctggtgaaagacatgcggagctgtagctagacagctagctgatctagtagcagcgcacgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGACGCTGAAGAGAAAGACATGCTGGACTACCTATACACATCGCAGTACCAG
species | Zea mays |
transcript | GRMZM2G092497_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAG GAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGAEST: gi|50328293|gb|CO523419.1|CO523419
genomic: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacct ... cgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
EST: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAG GAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGAEST: gi|32851169|gb|CD990850.1|CD990850
genomic: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacct ... cgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
EST: GTGCTTGAGTCCAGGAACGGTGCGCATCCTGGTGGCCTTACGAAGAAAAG GAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
genomic: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacct ... cgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
atgcggagctgtagctagacagctagctgatctagtagcagcgcacgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGACGCTGAAGAGAAAGACATGCTGGACTACCTATACACATCGCAGTACCAG
agctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaacctggtgaaagacatgcggagctgtagctagacagctagctgatctagtagcagcgcacgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGACGCTGAAGAGAAAGACATGCTGGACTACCTATACACATCGCAGTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA