1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acaggagctctcccaaacgggacctaatagagaaccttcagtccgtccgttcgtcaacggttactaagctcctaatcttcaccctctgttttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT
species | Zea mays |
transcript | GRMZM2G092468_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211387542|gb|FL169282.1|FL169282
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCACGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211087643|gb|FL395856.1|FL395856
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211394823|gb|FL369347.1|FL369347
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211439056|gb|FL385005.1|FL385005
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|13562177|gb|BG550397.1|BG550397
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|5928953|gb|AW056245.1|AW056245
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGNGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|17932462|gb|BM269422.1|BM269422
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|32908604|gb|CF013417.1|CF013417
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|18170299|gb|BM340139.1|BM340139
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|15312803|gb|BI478393.1|BI478393
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAEST: gi|22489538|gb|BU049461.1|BU049461
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACA
EST: AAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211211675|gb|FL370026.1|FL370026
genomic: AAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGSSACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211387544|gb|FL169284.1|FL169284
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|17970239|gb|BM277003.1|BM277003
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|32916309|gb|CF021121.1|CF021121
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAATATATAACCTTGACCAEST: gi|32863022|gb|CF002704.1|CF002704
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211439568|gb|FL408949.1|FL408949
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGS-ACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211161696|gb|FL418714.1|FL418714
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAEST: gi|211408542|gb|FL414508.1|FL414508
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCNEST: gi|211348483|gb|FL394288.1|FL394288
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCEST: gi|76286967|gb|DV026535.1|DV026535
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACC
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|17929488|gb|BM266448.1|BM266448
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211434160|gb|FL401089.1|FL401089
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|87151661|gb|DY396450.1|DY396450
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAEST: gi|211387541|gb|FL169281.1|FL169281
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
tccgttcgtcaacggttactaagctcctaatcttcaccctctgttttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT
tcctaat putative branch site (score: 2)
ctcctaatcttcaccc CT-rich tract
tgtttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaggagctctcccaaacgggacctaatagagaaccttcagtccgtccgttcgtcaacggttactaagctcctaatcttcaccctctgttttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT
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