1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgggcgctccagctgtgtactgccgtgtgccgtgtccagttgctgctgttttttcacgaccttacttacgattgaattaggctgaaatgaactctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAATTACCTCCGGTGCGACCCAGAAGATCATTATTTTCTTCTAACTGAGAGCC
species | Zea mays |
transcript | GRMZM2G092459_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCGCCACC-GCCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAG GTGGAAAAATTGGGATTCTATGGAGAGGTTTTGGCAEST: gi|71304657|gb|DR788445.1|DR788445
genomic: C-GCGCCAGCAGC-TCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAGgtgggcgctc ... actctttcagGTGGAAAA-TTGGGATTCTATGGAGAGGTTTTGGCA
EST: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAG GTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAATEST: gi|50332359|gb|CO527485.1|CO527485
genomic: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAGgtgggcgctc ... actctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAAT
EST: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAG GTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAATEST: gi|78093378|gb|DV521752.1|DV521752
genomic: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAGgtgggcgctc ... actctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAAT
EST: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAG GTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAATEST: gi|50332366|gb|CO527492.1|CO527492
genomic: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAGgtgggcgctc ... actctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAAT
EST: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAG GTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAATEST: gi|71448011|gb|DR829061.1|DR829061
genomic: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAGgtgggcgctc ... actctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAAT
EST: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAG GTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAAT
genomic: CCCGCGCCAGCAGCTCGCACAGCTTGAGCTATCCCATCCGCAACGGCCAGgtgggcgctc ... actctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAAT
ctgttttttcacgaccttacttacgattgaattaggctgaaatgaactctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAATTACCTCCGGTGCGACCCAGAAGATCATTATTTTCTTCTAACTGAGAGCC
tacttac putative branch site (score: 1)
ctctttc putative PPT
attgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcgctccagctgtgtactgccgtgtgccgtgtccagttgctgctgttttttcacgaccttacttacgattgaattaggctgaaatgaactctttcagGTGGAAAATTGGGATTCTATGGAGAGGTTTTGGCAACAGTGCATCTTCAATTACCTCCGGTGCGACCCAGAAGATCATTATTTTCTTCTAACTGAGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA