1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cctactgttctcatttgatagcagcatacctatacaggtcatcagaatcataaatactttgttggcaagttttctctgagctgcattctcctcgttgtagGGCCCAAGCTTTTGCTGATCACTTCAAGATGGCGCTGGACTGCTTCTTCGCTGTATGGTTTGTTGTGGGAAATGTGTGGGTGTTTGGTGGACATTCTTCC
species | Zea mays |
transcript | GRMZM2G092244_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTATCAAATGGAGTCTTGAGAAACAATGTGGTTATCACAAATCCCAAG G-CCCAAGCTTTTGCTGATEST: gi|76287506|gb|DV027074.1|DV027074
genomic: CTGTATCAAATGGAGTCTTGAGAAACAATGTGGTTATCACAAATCC-AAGgtaacatatc ... ctcgttgtagGGCCCAAGCTTTTGCTGAT
EST: ACTGTATCAAATGGAGTCTTGAGAAACAATGTGGTTATCACAAATCCAAG GGCCCAAGCTTTTGCTGATCACTTCAAGATGGCGCTGGACTGCTTCTTCGCEST: gi|74235718|gb|DT643632.1|DT643632
genomic: ACTGTATCAAATGGAGTCTTGAGAAACAATGTGGTTATCACAAATCCAAGgtaacatatc ... ctcgttgtagGGCCCAAGCTTTTGCTGATCACTTCAAGATGGCGCTGGACTGCTTCTTCGC
EST: ACTGTATCAAATGGAGTCTTGAGAAACAATGTGGTTATCACAAATCCAAG GGCCCTAGCTTTTGCTGATCACTTCAAGATGGCGCTGGACTG
genomic: ACTGTATCAAATGGAGTCTTGAGAAACAATGTGGTTATCACAAATCCAAGgtaacatatc ... ctcgttgtagGGCCCAAGCTTTTGCTGATCACTTCAAGATGGCGCTGGACTG
aatcataaatactttgttggcaagttttctctgagctgcattctcctcgttgtagGGCCCAAGCTTTTGCTGATCACTTCAAGATGGCGCTGGACTGCTTCTTCGCTGTATGGTTTGTTGTGGGAAATGTGTGGGTGTTTGGTGGACATTCTTCC
ttctcctcgtt CT-rich tract
taaatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctactgttctcatttgatagcagcatacctatacaggtcatcagaatcataaatactttgttggcaagttttctctgagctgcattctcctcgttgtagGGCCCAAGCTTTTGCTGATCACTTCAAGATGGCGCTGGACTGCTTCTTCGCTGTATGGTTTGTTGTGGGAAATGTGTGGGTGTTTGGTGGACATTCTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA