1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaaattatgtcacttttctggaaacttgtatgctattcatagcttaagtaacgtgtgtttggtttatggagccactttttcgcttctatggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAG
species | Zea mays |
transcript | GRMZM2G092152_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|78021667|gb|DV490054.1|DV490054
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|60338639|gb|DN205612.1|DN205612
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|32909568|gb|CF014380.1|CF014380
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCGCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211489357|gb|FL110823.1|FL110823
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|9732493|gb|BE511245.1|BE511245
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCCCTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211489363|gb|FL110829.1|FL110829
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCARAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211489356|gb|FL110822.1|FL110822
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211486489|gb|FL110821.1|FL110821
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211489365|gb|FL110831.1|FL110831
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCEST: gi|32909569|gb|CF014381.1|CF014381
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGC
EST: GCTCCGTCGACGTGGTCATCGCGCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|17932025|gb|BM268985.1|BM268985
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211489360|gb|FL110826.1|FL110826
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211489362|gb|FL110828.1|FL110828
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|9732494|gb|BE511246.1|BE511246
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|211489359|gb|FL110825.1|FL110825
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCEST: gi|14243770|gb|BG841433.2|BG841433
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
EST: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAG AAGGGTTCATTTGATGCTGAAAAGAA--CAGTGACACTCCAAAGCGAACTC
genomic: GCTCCGTCGACGTGGTCATCGCTCAGAGCACTGGCCTCGCCGAGGTCCAGgtgagctcct ... ggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTC
taagtaacgtgtgtttggtttatggagccactttttcgcttctatggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAG
aagtaac putative branch site (score: 56)
acttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaattatgtcacttttctggaaacttgtatgctattcatagcttaagtaacgtgtgtttggtttatggagccactttttcgcttctatggaattgcagAAGGGTTCATTTGATGCTGAAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - ttttctg
- - - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt