Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211454216|gb|FL164058.1|FL164058EST: AAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAG GTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTAC
genomic: AAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAGgtactgttca ... actttggcagGTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTAC
EST:
gi|9732493|gb|BE511245.1|BE511245EST: AAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAG GTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTAC
genomic: AAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAGgtactgttca ... actttggcagGTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTAC
EST:
gi|5804510|gb|AI979480.1|AI979480EST: AAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAG GTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTAC
genomic: AAAAGAAAACAGTGACACTCCAAAGCGAACTCGTAGGGAATGCATCAAAGgtactgttca ... actttggcagGTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagatgcagatacggtgtctttaccctactaataaacactgctgaactttggcagGTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTACGTCGTTCAGATGGCAACGATCACAACTAGCCTACAGCCACATCTCAAGG
tactaat putative branch site (score: 1)
tactaataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcgccttcgcacactatcatgtgctagatcagatgctactgagtttagatgcagatacggtgtctttaccctactaataaacactgctgaactttggcagGTGAAGCAGATCACGAGAACTTTTCAGGTGGCAGATGGGGAGCTCTCGTACGTCGTTCAGATGGCAACGATCACAACTAGCCTACAGCCACATCTCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG