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gtgagttggttagggttgtgccgctgcgagcagactgtaataagcctcgccccgttctcgctacaccgtggagttggatcgttcaattcaggactaactgtgaggcttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGCTGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGC
species | Zea mays |
transcript | GRMZM2G092129_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|149103443|gb|EE288836.2|EE288836
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211162016|gb|FL219543.1|FL219543
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|148971559|gb|EE022272.2|EE022272
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|74241137|gb|DT649051.1|DT649051
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|71331353|gb|DR802511.1|DR802511
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211162015|gb|FL219542.1|FL219542
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211162018|gb|FL219545.1|FL219545
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTCGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211162017|gb|FL219544.1|FL219544
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTCGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
cttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGCTGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGC
ttgcgtgtctctctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttggttagggttgtgccgctgcgagcagactgtaataagcctcgccccgttctcgctacaccgtggagttggatcgttcaattcaggactaactgtgaggcttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGCTGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA