1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgatgtcaaatattcttcaaaactgcttggaatttaatccttactctgactagagcaacctgttccctctgttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATATTTACTTTCACGTGATGTCC
species | Zea mays |
transcript | GRMZM2G092120_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACTCAATTCATTCATGGAGCAAATCAATACCTAGACCAGATCTCCCAG ATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTTEST: gi|211358804|gb|FL192107.1|FL192107
genomic: GAACTCAATTCATTCATGGAGCAAATCAATACCTAGACCAGATCTCCCAGgttcgatgtc ... gttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTT
EST: GAACTCAATTCATTCATGGAGCAAATCAATACCTAGACCAGATCTCCCAG ATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTTEST: gi|211358802|gb|FL192105.1|FL192105
genomic: GAACTCAATTCATTCATGGAGCAAATCAATACCTAGACCAGATCTCCCAGgttcgatgtc ... gttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTT
EST: GAACTCAATTCATTCATGGAGCAAATCAATACCTAGACCAGATCTCCCAG ATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTT
genomic: GAACTCAATTCATTCATGGAGCAAATCAATACCTAGACCAGATCTCCCAGgttcgatgtc ... gttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTT
cttggaatttaatccttactctgactagagcaacctgttccctctgttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATATTTACTTTCACGTGATGTCC
cctgttccctctgttc CT-rich tract
aatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgatgtcaaatattcttcaaaactgcttggaatttaatccttactctgactagagcaacctgttccctctgttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATATTTACTTTCACGTGATGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG