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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgccgatgtgttgcttgttaagatgtctgctctatgatacaattcattatattagagtggtaaatgataagcaattcctttttgtgttttttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG

Basic information

species Zea mays
transcript GRMZM2G091503_T05
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091503_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 3'ss of exon 1
tgccgatgtgttgcttgttaagatgtc----tgctctatgatacaattcattatattagagtggtaaatgataagcaattcctt-tttgtgttttttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG
     | |||   ||| | |||  |||    ||||  || ||     |     |    | |  |||| | ||| |||||||||   || |||||| ||||   ||  || || |||||||| || | | ||||||||||||| ||||||||||| ||||| ||||||||||| | | | | |||||||
--aaaaagtggaacttctaaagtagtcattttgctacattattttgatggagctgcatgtgcagtaattaatatgcaattcctggcttctgttttatttc---agTTTCGTGCCTGAAATCCTCGAAAGCAAACACCATAGTGCTATCTGGGCTCAGTGGTAGTGGCAAAACTATTCTCTTCTACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211020826|gb|FL435096.1|FL435096
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatattagagtggtaaatgataagcaattcctttttgtgttttttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG
                             ttcctttttgtgtttt  CT-rich tract
                                 tttttgtgtttttttt  TA-rich tract