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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgccgatgtgttgcttgttaagatgtctgctctatgatacaattcattatattagagtggtaaatgataagcaattcctttttgtgttttttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG

Basic information

species Zea mays
transcript GRMZM2G091503_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091503_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 3'ss of exon 1
tgccgatgtgttgcttgttaagatgtc----tgctctatgatacaattcattatattagagtggtaaatgataagcaattcctt-tttgtgttttttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG
     | |||   ||| | |||  |||    ||||  || ||     |     |    | |  |||| | ||| |||||||||   || |||||| ||||   ||  || || |||||||| || | | ||||||||||||| ||||||||||| ||||| ||||||||||| | | | | |||||||
--aaaaagtggaacttctaaagtagtcattttgctacattattttgatggagctgcatgtgcagtaattaatatgcaattcctggcttctgttttatttc---agTTTCGTGCCTGAAATCCTCGAAAGCAAACACCATAGTGCTATCTGGGCTCAGTGGTAGTGGCAAAACTATTCTCTTCTACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211515522|gb|FL138438.1|FL138438
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513176|gb|FL138432.1|FL138432
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATC-TAG                         CATCTTGTCTGAAATCGTCT
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCT
EST: gi|211020826|gb|FL435096.1|FL435096
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515518|gb|FL138434.1|FL138434
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTWG                         CATCTTGTCTGAAATCGTCTTGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211433350|gb|FL131195.1|FL131195
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26557413|gb|CA829648.1|CA829648
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|60339827|gb|DN206800.1|DN206800
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|60346742|gb|DN213715.1|DN213715
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCATCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513168|gb|FL138424.1|FL138424
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTTGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513170|gb|FL138426.1|FL138426
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26456106|gb|CA827689.1|CA827689
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCCATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515523|gb|FL138439.1|FL138439
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|21809710|gb|BQ668028.1|BQ668028
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|89106845|gb|DY577062.1|DY577062
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|22935960|gb|BU572235.1|BU572235
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|60344808|gb|DN211781.1|DN211781
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCATCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513175|gb|FL138431.1|FL138431
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515531|gb|FL138440.1|FL138440
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCTTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|22818765|gb|BU498855.1|BU498855
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26559708|gb|CA831943.1|CA831943
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|22520628|gb|BU079439.1|BU079439
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513172|gb|FL138428.1|FL138428
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACANCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|32914426|gb|CF019238.1|CF019238
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26559949|gb|CA832184.1|CA832184
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515519|gb|FL138435.1|FL138435
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatattagagtggtaaatgataagcaattcctttttgtgttttttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG
                             ttcctttttgtgtttt  CT-rich tract
                                 tttttgtgtttttttt  TA-rich tract