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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG

Basic information

species Zea mays
transcript GRMZM2G091265_T05
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g21770.1 (Oryza sativa), 3'ss of exon 2
------gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattat---ttttgcttctgatg-taat-----gtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
      |  | || | |  |   || | | | | ||  |  ||     | |  |   | || | | |    |||| || |  || ||||     ||||   ||||| | ||  |||    ||| ||| |||| || || |||||||| ||||||||||| ||||||||||| || ||||||||||| || ||||||||||||||
gtatttgctccaaccccccctccttttttgatcattgattttgcatctgcttgttgttatgcaatgtgggctttggttgtactgataatggttggtggtggttttggt-ttgggtgtgtgtgtgtgtgtgtgcagGTACTGCAAGTGCGAGATGCCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G35680.2 (Glycine max), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttt--tgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                     ||||  || | || |||  |  ||| | || |  | || |   || ||   |||    ||    ||||  |||| |  |  |   ||||     | ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||||||||| || |||||||| ||
---------------------gtaagtttatttc-tgttttttttagtgagataatgttgtaagtgtttgaaatggtgggttttgttttgttgatttggttcggttttgt---ggtttgaagGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G34740.3 (Glycine max), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttt--tgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG-------------------------------
     ||| | ||   |||||||    ||||    || | |  |      |||||| || |   || ||   |||    ||    ||||  |||| |  | ||   |||| | |   ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||||||||| || |||||||| ||                               
---gtaagtttttttatttctgt----ttttac--tgagataatggtgttgtttgtgttttaagtgtttgaaatggtgggttttgttttgttgatttagtttggttttgtgttt---tgaagGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTAAAACCAGTATATTCTGCTTTTTTTTGTT

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G20180.1 (Glycine max), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                     || |    ||||   |  | || |  |  |||| |   | |  ||   ||  | |  | |    || |||| ||| | |     | | ||| | ||||| |||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||||||| ||
------------------gaggttattgattgtggggatggggattttgggttt-tggaactgatggggcttttctttttttcttttcttgaactttttttgtggtttgtgttt-tgaagGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G34740.1 (Glycine max), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttt--tgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
     ||| | ||   |||||||    ||||    || | |  |      |||||| || |   || ||   |||    ||    ||||  |||| |  | ||   |||| | |   ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||||||||| || |||||||| ||
---gtaagtttttttatttctgt----ttttac--tgagataatggtgttgtttgtgttttaagtgtttgaaatggtgggttttgttttgttgatttagtttggttttgtgttt---tgaagGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G34850.1 (Glycine max), 3'ss of exon 1
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
      ||   ||  |||  |      ||  | |  | || ||||        | | || |||||  ||  |  |    | |||      |  ||| | ||   |||| | |   ||||| |||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||||||| ||
----ggaggggtttttttggt------ttcaggcccgagggggtt------ccttttttttttttttttggggggggggggggggcgggggggcttttttggt-ttgtgttt---tgaagGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: AT4G22140.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggtta-atcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtga--cattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                     ||||    | |  |  | ||  | | |||||         || ||  | |        |    ||||||| ||||  ||||     ||||| || | ||||| || ||||| ||||| ||||| ||||| || || || |||||||||||||||||||| ||||| |||||
---------------------gtaag---tagataaatagtaatcagatcagaactacgccttcttattacctggaatttccatgattttttatctgttgtgggttgttgttggt-tctgaagGTACTGCAAATGTGAAATGCCTTACAATCCAGACGATCTCATGGTGCAGTGTGAAGGCTGCAAAGACTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: Vv10s0116g00160.t01 (Vitis vinifera), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggt--ggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                     || |  ||  ||  | | |   | || || |  ||| || |||     | ||| | |   ||||| |  |  ||  | |   |     ||||||| ||||| |||||||| || |||||||| || ||||| ||||| || ||||| ||||| || || |||||||||||
---------------------gtgagtttgagttgttttgctggattgatga--ttg-atgattgaatgtactggtatt-cgtgggctgatgaatacttttgaat----tttgtat-tgaagGTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: Vv12s0059g01180.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttg--cttctgat--gtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                                         | | |         || || | |  || | | |  |  |  ||| |  | ||| ||  |||  |   || ||||  | | ||   |||  ||||   | | ||     ||||  || | ||| ||||| ||||| |||||||| || || ||||| ||||| ||||||||||| |||||||||||||||||
gtgagtccgagttccattaaagattaaactgcatttagctcatagaagcagaaaattactttcaaattgt-taaactaataattacttggattggatgttttgagggtttttgattggcactgactgatgcttgaatgtttttgg----gttttgatttaaagGTATTGTAAGTGCGAGATGCCTTATAATCCGGACGACCTTATGGTGCAGTGCGAAGGATGCAAGGACTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: PP1S384_37V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------gtacaaagctcttccttttctgtaa-ccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                                                                    | |  ||| | |  |   |  |    ||| ||| | |||   || | ||||   ||    ||| |||   | | |   |    |||||      | |  ||  || |  ||| |    || |||||||||||||||||||| |||||||| ||  || | ||| || | ||  |  | ||||| |||||
gtaaggctccgcattgcatgaatgagtcgtttaagatgggcataacctatgaagtttgcgtgtggtaatgcgcagcgcatgttaggcgttgggtcttctgtgaggtg-cagtgagtcagg--gttaggtttgtgcagttaacgactttgtcgatttcgttgataacttggaatggggtgttt---cagGTATTGCAAGTGTGAGATGCCATACAACCCTGACCACGTGATGCTGGAATGCAACAGTTGCAAAGACTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: EFJ05369 (Selaginella moellendorffii), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttg-tattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                                               | || |||  |    | |  |||  |||    | |   ||  |   | || |  |     |||||       || || |||||||| |||||||| |||||||||||||| || |||||||||||||| |  ||||| |||||
----------------------------------------------gtaagattgacaaagctctcactttggattctctatcttatgctctctttttttgg-----gtttgcggaaacagGTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: EFJ17782 (Selaginella moellendorffii), 3'ss of exon 2
--------------------------------------------------------gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggattttt---gatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                                                         ||  |||||  || || |        | | ||  |||  |  |  | |   |  | || |  |||  |  ||  |  | |    | | |   | |||||     |  | ||  || |||||| |||||||||||||||||||| ||||| ||||| ||  | ||||| ||||| ||    |||||||| ||
gtaagtgctctctctctccctctgtctctctggcgtctcgttgactagttgtgttcttatcaagcttctctttcttctcttggtctcgttgtgttcttatcgaacttctcctgttctcgttgtgttcgaacttctctttcttctcttgtgttcttaccaagcgct-ttattacgtgaagGTATTGCAAGTGTGAGATGCCATACAATCCGGACGATTTGATGGTTCAGTGCGAGTCCTGCAAGGATTG

upper sequence: GRMZM2G091265_T05 (Zea mays), 3'ss of exon 2
lower sequence: EFJ26805 (Selaginella moellendorffii), 3'ss of exon 2
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatg-tgacattgtttgtatgtgaa---gATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                                                          ||   |||     | | | |  | ||||| |  |||||||| |  | || ||||  | ||||   | || |||||||| |||||||| |||||||||||||| || |||||||||||||| |  ||||| |||||
---------------------------------------------------------gtaagattgacaaagctctcactttggattctctatcttatgctctctttttttgggtttgaaacagGTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211264339|gb|FL410550.1|FL410550
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211292773|gb|FL412753.1|FL412753
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|9952858|gb|BE639441.1|BE639441
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|50325986|gb|CO521112.1|CO521112
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|148933222|gb|EC876874.2|EC876874
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211469231|gb|FL410779.1|FL410779
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|78091413|gb|DV519787.1|DV519787
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60349186|gb|DN216159.1|DN216159
EST:     CCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: CCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|78026942|gb|DV495329.1|DV495329
EST:     TCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|94476085|gb|EB705043.1|EB705043
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60344966|gb|DN211939.1|DN211939
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|50325839|gb|CO520965.1|CO520965
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|71434213|gb|DR815263.1|DR815263
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|44682094|gb|CK787142.1|CK787142
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60344681|gb|DN211654.1|DN211654
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|71434212|gb|DR815262.1|DR815262
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60338381|gb|DN205354.1|DN205354
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG
                   atttttgatcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG