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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaactgcctttcatcaagatgttatttttttctgctctcttgccctatgtctactttgttatgcagaatgaactaattaatttatcttgtgtttatttagTTTCCTTTTGACTGCGAGGCGAAGTATAATTCATCTGGAATATCTACTTTGGTCAGGATTAGGACCAAACAATGAATGATGAACATGGGGTTCCTTAGAG

Basic information

species Zea mays
transcript GRMZM2G091265_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090599|gb|DV518973.1|DV518973
EST:     CCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTG                         TTTCCTTTTGACTGCGAGGCGAAGTATAATTCATCTGGAATATCTACTTTG
genomic: CCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTGgtaaaatcct ... gtttatttagTTTCCTTTTGACTGCGAGGCGAAGTATAATTCATCTGGAATATCTACTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtctactttgttatgcagaatgaactaattaatttatcttgtgtttatttagTTTCCTTTTGACTGCGAGGCGAAGTATAATTCATCTGGAATATCTACTTTGGTCAGGATTAGGACCAAACAATGAATGATGAACATGGGGTTCCTTAGAG
                                              tttattt  CT-rich tract
                         aactaattaatttatc  TA-rich tract