1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttaaatgtagaaagtttggagttcacacttataagatatcttgatatgccaagtagtagtgtttggccattttttgtgagaaaaacttttttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCAATGAGAAATTGCAATGGTTTTTGAACTCTATCAAGTCATACTCGAATG
species | Zea mays |
transcript | GRMZM2G090722_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|148944671|gb|EC889806.2|EC889806
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|149085087|gb|EE174595.2|EE174595
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|9731558|gb|BE510310.1|BE510310
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|148964387|gb|EC905763.2|EC905763
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|76017251|gb|DT944421.1|DT944421
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|50331439|gb|CO526565.1|CO526565
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|148941210|gb|EC886099.2|EC886099
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|148982703|gb|EE028519.2|EE028519
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|149059656|gb|EE156999.2|EE156999
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCEST: gi|148940638|gb|EC885449.2|EC885449
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAG GTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
genomic: GAAAGAAAGTGCCTGTTTTACTTAGAATAAATCCAGATGTGGATCCACAGgtatggttac ... tttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGC
tatgccaagtagtagtgtttggccattttttgtgagaaaaacttttttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCAATGAGAAATTGCAATGGTTTTTGAACTCTATCAAGTCATACTCGAATG
cttttttcc CT-rich tract
agaaaaactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaatgtagaaagtttggagttcacacttataagatatcttgatatgccaagtagtagtgtttggccattttttgtgagaaaaacttttttccaacagGTACATCCATATGTTGCCACGGGAAATAAAACATCCAAATTCGGGATCCGCAATGAGAAATTGCAATGGTTTTTGAACTCTATCAAGTCATACTCGAATG
- - - - - - - - - - - - - - - - - - - - - - -tatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa