1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagacctatgaaaaacattctgaacctgctctgcctttgcataactttgtttgtacatgtttatttattctataatgtttttactaccctatttttcagGTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGGCTGGCTGATCCATTGGGTTATGTTCCAAAAGAAGATATATTATATGCTA
species | Zea mays |
transcript | GRMZM2G090338_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGTTGTTTCAGATGATGCAGGAGAACCTATTGGCTTTAACATCTAT GTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGGEST: gi|30031771|gb|CB833622.1|CB833622
genomic: TTGTTGTTGTTTCAGATGATGCAGGAGAACCTATTGGCTTTAACATCTATgtaagaccta ... tatttttcagGTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGG
EST: TTGTTGTTGTTTCAGATGATGCAGGAGAACCTATTGGCTTTAACATCTAT GTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGGEST: gi|213184477|gb|FM187273.1|FM187273
genomic: TTGTTGTTGTTTCAGATGATGCAGGAGAACCTATTGGCTTTAACATCTATgtaagaccta ... tatttttcagGTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGG
EST: TTGTTGTTGTTTCAGATGATGCAGGAGAACCTATTGGCTTTAACATCTAT GTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGG
genomic: TTGTTGTTGTTTCAGATGATGCAGGAGAACCTATTGGCTTTAACATCTATgtaagaccta ... tatttttcagGTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGG
ctttgtttgtacatgtttatttattctataatgtttttactaccctatttttcagGTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGGCTGGCTGATCCATTGGGTTATGTTCCAAAAGAAGATATATTATATGCTA
ctaccctatttttc CT-rich tract
tttgtacatgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacctatgaaaaacattctgaacctgctctgcctttgcataactttgtttgtacatgtttatttattctataatgtttttactaccctatttttcagGTTGGTGGTGGCATGGGAAGGACACACCGAGTGGAAACTACATTCCCTCGGCTGGCTGATCCATTGGGTTATGTTCCAAAAGAAGATATATTATATGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG