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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttccagagttcccagactcgtcctcctcgcagccacgcggcacgccccgccgtggtctggggcgctttctcttctgcgccgcgagacgaatggataccagacgaccaacaatcgcgtgttggtggtggtttgcatttgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACCAGTCCCACCACCGGCCCCGCGACGGGCCCT

Basic information

species Zea mays
transcript GRMZM2G090051_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090051_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 3'ss of exon 2
gtgagttccagagttcccagactcgtcctcctcgcagccacgcggcacgccccgccgtggtctggggcgctttctcttctgcgccgcgagacgaatggataccagacgaccaacaatcgc---gtgttggtggtggtttgcat-ttgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACCAGTCCCACCACCGGCCCCGCGACGGGCCCT
                                                   | ||||||     |     |  || || ||| |   || |   | |       || | | ||   | ||    | |||  | | | | |    |||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||| || ||||||||||||||| |||| ||||||||  | ||||| || || |
----------------------------------------------gtaagcggccgtgacaccgcaaaatccctgtt-tgctcgctgata---acgtccttgggatgtcaaaattttgcttaattttgacgctcgctggggggttgcagGTTGGGATGGAGTTCTGGGCGCAGTGGGCGCACCGCTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGT

upper sequence: GRMZM2G090051_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv02s0025g00240.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttccagagttcccagactcgtcctcctcgcagccacgcggcacgccccgccgtggtctggggcgctttctcttctgcgccgcgagacgaatggataccagacgaccaacaatcgcgtgttggtggtggtttgcatttgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACCAGTCCCACCACCGGCCCCGCGACGGGCCCT
                                            | | |         | | |     ||||||   | |   | ||  ||  |||   |     | ||  |  |||| |  || |||| ||  ||| |||  ||||||||||||||||| |||||||||||||| |||   ||||| ||||| || || |||||||| |||||| ||                            
--------------------------------------------gtaagttagctaacgctataa---gctttcatgtattaactgct-gaaaaatccttgaagaaagatgatgaatctcaagtgggtgctg--ttg-attatcagGTGGGGATGGAGTTTTGGGCGCGGTGGGCTCACAAAGCGCTCTGGCATGCTTCACTGTGGCATATGCACGAG----------------------------