1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cactattgcagttatcttcaacaggtttgtttagatgtctgtctcagttatagatcatttttttatttacatgattgacgatttcctcttctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAATGGGGACCCCAAATCCAGTAGCTAATGCAATTACAACTGGTGTTGGTTTT
species | Zea mays |
transcript | GRMZM2G089507_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGTCCAGGGCAG CATGGCAGCAGC-TTTGGTTTCTGGGGCTCTATTCTCCATCGTGAGTGGAAEST: gi|149111703|gb|EE190848.2|EE190848
genomic: GATGTCCAGGGCAGgtaagcgttt ... ctgcatgtagCATGGCAGCAGCTTTTGG-TTCTGGGGCTCTATTCTCCATCGTGAGTGGAA
EST: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAG CATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAATEST: gi|149073934|gb|EE162261.2|EE162261
genomic: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGgtaagcgttt ... ctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAAT
EST: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAG CATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAATEST: gi|148947689|gb|EC893170.2|EC893170
genomic: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGgtaagcgttt ... ctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAAT
EST: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAG CATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAATEST: gi|20507320|gb|BQ279578.1|BQ279578
genomic: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGgtaagcgttt ... ctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAAT
EST: ATATCTTGTGTCATGAGAAGAATAAGAGGAGTGGAGGATGTCCAGGGCAG CATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAATEST: gi|149111704|gb|EE190849.2|EE190849
genomic: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGgtaagcgttt ... ctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAAT
EST: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAG CATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAAT
genomic: ATATCTTGTGTCATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGgtaagcgttt ... ctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAAT
agttatagatcatttttttatttacatgattgacgatttcctcttctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAATGGGGACCCCAAATCCAGTAGCTAATGCAATTACAACTGGTGTTGGTTTT
gattgac putative branch site (score: 83)
tttcctcttctgcat putative PPT
atcatttttttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactattgcagttatcttcaacaggtttgtttagatgtctgtctcagttatagatcatttttttatttacatgattgacgatttcctcttctgcatgtagCATGGCAGCAGCTTTTGGTTCTGGGGCTCTATTCTCCATCGTGAGTGGAATGGGGACCCCAAATCCAGTAGCTAATGCAATTACAACTGGTGTTGGTTTT
- ctattgc
- - - - - - - - - - - - - - - - - atgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatt