1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctgctcaagctcaaccgtgaatgtttctgctgccactgccgcctctcgcaagctgttcgactgttagcctctcaccaatagaagccatgtctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTTCATATCGGAGATCTGCGTGCCGTCCTCGCTCTTCACCAGCCGCTTCTA
species | Zea mays |
transcript | GRMZM2G089259_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|50337271|gb|CO532397.1|CO532397
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211183324|gb|FK979377.1|FK979377
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|87157614|gb|DY402403.1|DY402403
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|71428557|gb|DR809607.1|DR809607
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|94475718|gb|EB704676.1|EB704676
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211180921|gb|FK979369.1|FK979369
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGNCAGACGGCGCGCTEST: gi|50336816|gb|CO531942.1|CO531942
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211183319|gb|FK979372.1|FK979372
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211180923|gb|FK979371.1|FK979371
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211183323|gb|FK979376.1|FK979376
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCTAAG AGCTGATGCTGCTCGGAGTNATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|22546168|gb|BU098479.1|BU098479
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|71321201|gb|DR797302.1|DR797302
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|71329466|gb|DR801453.1|DR801453
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211183322|gb|FK979375.1|FK979375
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|87157722|gb|DY402511.1|DY402511
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|148957093|gb|EC903064.2|EC903064
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|22819833|gb|BU499923.1|BU499923
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|37421156|gb|CF648275.1|CF648275
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211226258|gb|FL422663.1|FL422663
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211183328|gb|FK979381.1|FK979381
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|71428023|gb|DR809073.1|DR809073
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|76012907|gb|DT940077.1|DT940077
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|26558674|gb|CA830909.1|CA830909
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|211180922|gb|FK979370.1|FK979370
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|33466850|gb|CF243899.1|CF243899
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTEST: gi|148994788|gb|EE034233.2|EE034233
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
EST: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAG AGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
genomic: CAAGACCAAGCGGAAGGCCATGCTCGCCGCGCTCGAGAAGATCCGCGAAGgtacgttccc ... ctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCT
tcgcaagctgttcgactgttagcctctcaccaatagaagccatgtctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTTCATATCGGAGATCTGCGTGCCGTCCTCGCTCTTCACCAGCCGCTTCTA
ctctcac putative branch site (score: 56)
aatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctcaagctcaaccgtgaatgtttctgctgccactgccgcctctcgcaagctgttcgactgttagcctctcaccaatagaagccatgtctgcacgcagAGCTGATGCTGCTCGGAGTCATCTCGCTGCTGCTCAGCCAGACGGCGCGCTTCATATCGGAGATCTGCGTGCCGTCCTCGCTCTTCACCAGCCGCTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - -caagctc
- - - - - - - - gtgaatg
- - - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - -ctgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - -gctgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatgt