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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattccctttcatttctaggtcaagcaccgtctgtactggattcggactccaattaaatctcttttctcttttatggttttagGCTGAACTCCAGTACTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGCCTAAATGCAAACCCTGTCGTTAAGCTTTCTGGTGTATTCGGAACTAAAA

Basic information

species Zea mays
transcript GRMZM2G088132_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18659848|gb|BM500553.1|BM500553
EST:     GCCTGAAGGCATTTTTATGCATTCCTTTCCCGTACAAGAAATCTGCAAAG                         GCTGAACTCCAGTACTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCCTGAAGGCATTTTTATGCATTCCTTTCCCGTACAAGAAATCTGCAAAGgtatatattc ... atggttttagGCTGAACTCCAGTACTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctgtactggattcggactccaattaaatctcttttctcttttatggttttagGCTGAACTCCAGTACTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGCCTAAATGCAAACCCTGTCGTTAAGCTTTCTGGTGTATTCGGAACTAAAA
                              tctcttttctctttta  CT-rich tract
                       aattaaatctctttt  TA-rich tract