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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatccagatgagtgcatggtacttctttcttaattcccacaactttatgtgaaagttaagtagtaacttgctgattgagtttccataaatttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG

Basic information

species Zea mays
transcript GRMZM2G088088_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088088_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g06350.1 (Oryza sativa), 3'ss of exon 2
tgaatccagatgagtgcatggtacttctttcttaattcccacaactttatgtgaaa-gttaagtagtaacttgctgattgagtttccataaatttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG
 |  |  ||   |||| |   ||  |  ||      | | ||  || ||     |  |||||   ||  |    ||      |||   ||||| | | ||||||| ||||| ||||| || |||||||||| |||||| |||||||| || || ||||  || ||   |||||||||  ||||||||||||||
-gggtaaagtccagtgaaatataactgattgcatgattctactcctataaacagactgttaaaaggtgccactttgtaatgatttgtttaaatgtttgtagAGCGGAGTCCTCCAATTGAGGAGGTGATCAACACAGGGGTGGTGCCTCGCTTTATTGCCTTCCTCCAACGTGAGGATTATCCCCAACTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211466271|gb|FL273962.1|FL273962
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466275|gb|FL273966.1|FL273966
EST:     CTCCGTGCAGCTTGAGGCCAC-ACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGA
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGA
EST: gi|88758378|gb|DY542747.1|DY542747
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211413307|gb|FL164847.1|FL164847
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211376201|gb|FL253486.1|FL253486
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211410760|gb|FL164835.1|FL164835
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCC
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCC
EST: gi|211410763|gb|FL164838.1|FL164838
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211410759|gb|FL164834.1|FL164834
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211410766|gb|FL164841.1|FL164841
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211008179|gb|FL253536.1|FL253536
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466268|gb|FL273959.1|FL273959
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211468801|gb|FL273976.1|FL273976
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466274|gb|FL273965.1|FL273965
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466269|gb|FL273960.1|FL273960
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCG
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCG
EST: gi|148943100|gb|EC888155.2|EC888155
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211413302|gb|FL164842.1|FL164842
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCTCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466267|gb|FL273958.1|FL273958
EST:     TCCGTGCAGCTTGAGGCCAC-ACACAGTTCAGGAAGCTGCTTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTG
genomic: TCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTT-CTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTG
EST: gi|211466276|gb|FL273967.1|FL273967
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466277|gb|FL273968.1|FL273968
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211468797|gb|FL273972.1|FL273972
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|29167750|gb|CB411010.1|CB411010
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466272|gb|FL273963.1|FL273963
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|18053175|gb|BM318833.1|BM318833
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|91052953|gb|EB163371.1|EB163371
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|91879015|gb|EB408972.1|EB408972
EST:     TCCGTGCAGCTTGAGGCCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGA
genomic: TCCGTGCAGCTTGAGGCC-ACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCC-AATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGA
EST: gi|211466270|gb|FL273961.1|FL273961
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|67023557|gb|CO452306.1|CO452306
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211466273|gb|FL273964.1|FL273964
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211410761|gb|FL164836.1|FL164836
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211468798|gb|FL273973.1|FL273973
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211008180|gb|FL253537.1|FL253537
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGGGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|78078677|gb|DV507089.1|DV507089
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211413309|gb|FL164849.1|FL164849
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTG-TCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|211468795|gb|FL273970.1|FL273970
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|18385029|gb|BM418228.1|BM418228
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|22489097|gb|BU049020.1|BU049020
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
EST: gi|5555266|gb|AI881217.1|AI881217
EST:     CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAG                         AACGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT
genomic: CTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 630

CTCGATGGCTTGCCGGCGATGGTGCAGGCCGTCCACTCCAACGACCCCTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 896

CTCGATGGCTTGCCGGCGATGGTGCAGGCCGTCCACTCCAACGACCCCTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1054

CTCGATGGCTTGCCGGCGATGGTGCAGGCCGTCCACTCCAACGACCCCTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 564

CTCGATGGCTTGCCGGCGATGGTGCAGGCCGTCCACTCCAACGACCCCTCCGTGCAGCTTGAGGCCACCACACAGTTCAGGAAGCTGCTTTCTATAGgtgagattgg ... atttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgtgaaagttaagtagtaacttgctgattgagtttccataaatttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG
                                              tttctct  CT-rich tract
                                         ataaatttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaatccagatgagtgcatggtacttctttcttaattcccacaactttatgtgaaagttaagtagtaacttgctgattgagtttccataaatttctctagAGCGTAGTCCCCCAATCGAAGAGGTGATCAGCACAGGAGTGGTGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG

tgaatcc
- - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - ccacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat