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...tcatgtgattgttctgtgttaagggaaaaaaagaataattgaagttgattatgcagagaatttgtcacagctctttatttcgatatacttctgtgttcagGCCACGCATGTTGCAGCACAGTATGGTCAGACTGCATTCATTTACCACATTGTTGCAAAATGGAATGCTGATCCAGATATCCCTGATAATGATGGAAGGA
species | Zea mays |
transcript | GRMZM2G087806_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTGAAAGAAGGAGCTAAGGTGGATGCTACTGATTTATACGGGTATCAG GCCACGCATGTTGCAGCACAGTATGGTCAGACTGCATTCATTTACCACATTEST: gi|149080130|gb|EE169151.2|EE169151
genomic: TTCTGAAAGAAGGAGCTAAGGTGGATGCTACTGATTTATACGGGTATCAGgtctgtattc ... ctgtgttcagGCCACGCATGTTGCAGCACAGTATGGTCAGACTGCATTCATTTACCACATT
EST: TTCTGAAAGAAGGAGCTAAGGTGGATGCTACTGATTTATACGGGTATCAG GCCACGCATGTTGCAGCACAGTATGGTCAGACTGCATTCATTTACCACATT
genomic: TTCTGAAAGAAGGAGCTAAGGTGGATGCTACTGATTTATACGGGTATCAGgtctgtattc ... ctgtgttcagGCCACGCATGTTGCAGCACAGTATGGTCAGACTGCATTCATTTACCACATT
tgattatgcagagaatttgtcacagctctttatttcgatatacttctgtgttcagGCCACGCATGTTGCAGCACAGTATGGTCAGACTGCATTCATTTACCACATTGTTGCAAAATGGAATGCTGATCCAGATATCCCTGATAATGATGGAAGGA
agttgat putative branch site (score: 32)
tacttct putative PPT
tttatttcgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgtgattgttctgtgttaagggaaaaaaagaataattgaagttgattatgcagagaatttgtcacagctctttatttcgatatacttctgtgttcagGCCACGCATGTTGCAGCACAGTATGGTCAGACTGCATTCATTTACCACATTGTTGCAAAATGGAATGCTGATCCAGATATCCCTGATAATGATGGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-catgtga
- - - - -tgttctg
- - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - ttatgca