1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catgtatgagtgagtcagttgtcgtgtcacaagcataatcatagacacacagacagatcttgcaacatttactcattaatgtggttcatgggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG
species | Zea mays |
transcript | GRMZM2G087692_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|78078319|gb|DV506734.1|DV506734
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|101393422|gb|EB818643.1|EB818643
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|71440891|gb|DR821941.1|DR821941
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCCTGTCTTGGACTTCATTGGACAAATGATCEST: gi|26456098|gb|CA827681.1|CA827681
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGC-TGTCTTGGACTTCATTGGACAAATGATC
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|26560078|gb|CA832313.1|CA832313
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|13316098|gb|BG410545.1|BG410545
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|50328095|gb|CO523221.1|CO523221
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG ------G-ATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|74241982|gb|DT649896.1|DT649896
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|20208228|gb|BQ134317.1|BQ134317
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|87157627|gb|DY402416.1|DY402416
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|22819976|gb|BU500066.1|BU500066
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTEST: gi|93282992|gb|EB675256.1|EB675256
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
EST: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAG ------G-ATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
genomic: GAGACCCACTTTGTTATCGGCGATGAGGAGTTTCTTCCAATCAAAGAGAGgtgatttcac ... ggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCT
cacacagacagatcttgcaacatttactcattaatgtggttcatgggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG
cattaat putative branch site (score: 3)
atttactcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtatgagtgagtcagttgtcgtgtcacaagcataatcatagacacacagacagatcttgcaacatttactcattaatgtggttcatgggttctgaagCTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
-atgtatg
- - - - - - - - - - - - - -cacaagc
- - - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatg