Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaggcacattactattgttttatacttttattcaacttctatgctttataggaagatattatatggccaatacaaccaatgtacctctgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC

Basic information

species Zea mays
transcript GRMZM2G086904_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086904_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g38960.1 (Oryza sativa), 3'ss of exon 2
gtgcaggcacattactattgttttatacttttatt-caacttctatgctttataggaagatattatatggccaatacaaccaatgtacctctgttgaa---cagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC
                         |||    ||| | |     ||||  |   |  |  | ||| ||||  || | |||  ||| |  |||||| ||    ||||||| |||||||| || |||||||| ||||| |||| ||||||||| ||  |||| |  |||| ||||||||||||||| ||||| ||  ||||   ||
------------------------gtacacacattgctatcctcatgcagtgatgttatctgtta-atgg--aaaagaactgatggagttctgttcaataatagGAAGGGGCTGAAGAGGAACCTGAGAATAACGAGGATGGCCCTGATGAGGTTGTAGGGGCAGAGGCTGAAGATAAGGAACAAGAAAAAACTCAGCGCCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211479823|gb|FL079091.1|FL079091
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211497131|gb|FL079176.1|FL079176
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|89756827|gb|DY686702.1|DY686702
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211132169|gb|FL066406.1|FL066406
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211202195|gb|FL066453.1|FL066453
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211500014|gb|FL079188.1|FL079188
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211132172|gb|FL066409.1|FL066409
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211497141|gb|FL079186.1|FL079186
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211491362|gb|FL079150.1|FL079150
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60394107|gb|DN226977.1|DN226977
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211488472|gb|FL079130.1|FL079130
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211497133|gb|FL079178.1|FL079178
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|67033929|gb|CO462678.1|CO462678
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|67023915|gb|CO452664.1|CO452664
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|213191189|gb|FM195899.1|FM195899
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211356285|gb|FL079082.1|FL079082
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211199643|gb|FL066449.1|FL066449
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60354164|gb|DN221137.1|DN221137
EST:     TGACATGGGGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: TGACATGGGGTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211482713|gb|FL079106.1|FL079106
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|148949027|gb|EC894449.2|EC894449
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211482719|gb|FL079112.1|FL079112
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211482707|gb|FL079100.1|FL079100
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60355890|gb|DN222863.1|DN222863
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|18176963|gb|BM378173.1|BM378173
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211485599|gb|FL079126.1|FL079126
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211494246|gb|FL079165.1|FL079165
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60352015|gb|DN218988.1|DN218988
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211204767|gb|FL066468.1|FL066468
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211485591|gb|FL079118.1|FL079118
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211482708|gb|FL079101.1|FL079101
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211500015|gb|FL079189.1|FL079189
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211199632|gb|FL066438.1|FL066438
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATCACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211482718|gb|FL079111.1|FL079111
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211491367|gb|FL079155.1|FL079155
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|30087311|gb|CB885519.1|CB885519
EST:     GTATGAGGATGAGCCCCCAG-ACCGGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACC-GGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|33468145|gb|CF245194.1|CF245194
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|71317790|gb|DR795656.1|DR795656
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211479822|gb|FL079090.1|FL079090
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211199642|gb|FL066448.1|FL066448
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAAATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211132178|gb|FL066415.1|FL066415
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211485597|gb|FL079124.1|FL079124
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|71317789|gb|DR795655.1|DR795655
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|13490631|gb|BG517395.1|BG517395
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGATTTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|67030385|gb|CO459134.1|CO459134
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|37379391|gb|CF626441.1|CF626441
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|9824896|gb|BE574993.1|BE574993
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211133111|gb|FL066433.1|FL066433
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60355684|gb|DN222657.1|DN222657
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211202205|gb|FL066463.1|FL066463
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211491361|gb|FL079149.1|FL079149
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211133107|gb|FL066429.1|FL066429
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211133106|gb|FL066428.1|FL066428
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211008098|gb|FL135922.1|FL135922
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60349499|gb|DN216472.1|DN216472
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211497142|gb|FL079187.1|FL079187
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211491366|gb|FL079154.1|FL079154
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211479829|gb|FL079097.1|FL079097
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211494250|gb|FL079169.1|FL079169
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|13389425|gb|BG462716.1|BG462716
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GNNNNNNNNNAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|16918257|gb|BM073664.1|BM073664
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAAGAACAACGAAGATGCCCCTGATGACGT
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTG-AGAACAACGAAGATGCCCCTGATGACGT
EST: gi|211479820|gb|FL079088.1|FL079088
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGSATGACGT
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTG-ATGACGT
EST: gi|26457622|gb|CA829205.1|CA829205
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211204768|gb|FL066469.1|FL066469
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211494252|gb|FL079171.1|FL079171
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211479827|gb|FL079095.1|FL079095
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211485595|gb|FL079122.1|FL079122
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|32912111|gb|CF016923.1|CF016923
EST:     GTATGAGGATGAGCCCCCAGATCCGTAGTTTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211485590|gb|FL079117.1|FL079117
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211202199|gb|FL066457.1|FL066457
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAARATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|32908545|gb|CF013358.1|CF013358
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|20301294|gb|BQ164237.1|BQ164237
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGA-TGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211131248|gb|FL066400.1|FL066400
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60337282|gb|DN204255.1|DN204255
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211488483|gb|FL079141.1|FL079141
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211491358|gb|FL079146.1|FL079146
EST:     GTATGAAGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|60343431|gb|DN210404.1|DN210404
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211491357|gb|FL079145.1|FL079145
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|33467778|gb|CF244827.1|CF244827
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|40485863|gb|CK394777.1|CK394777
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|30087312|gb|CB885520.1|CB885520
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211482709|gb|FL079102.1|FL079102
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|166565906|gb|EG201115.1|EG201115
EST:     CGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCC
genomic: CGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCC
EST: gi|32910381|gb|CF015193.1|CF015193
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211485589|gb|FL079116.1|FL079116
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|37374244|gb|CF623466.1|CF623466
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211008103|gb|FL135927.1|FL135927
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC
EST: gi|211482712|gb|FL079105.1|FL079105
EST:     GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG                         GAAGGAGCTGAAGAAGAGCCTGAGAACAATGAAGATGCCCCTGATGACGTC
genomic: GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 1808

GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC


Block sizes: 34 (upstream exon), 49 (downstream exon)
Score: 613

GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 437

GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 1247

GTATGAGGATGAGCCCCCAGAACCGGAGATTGAGgtgcaggcac ... tgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttataggaagatattatatggccaatacaaccaatgtacctctgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC
                                         cctctgtt  CT-rich tract
          aagatattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcaggcacattactattgttttatacttttattcaacttctatgctttataggaagatattatatggccaatacaaccaatgtacctctgttgaacagGAAGGAGCTGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGACGTCATAGGTGGTGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA