1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacttctgttttggttcatactagaatgtatagatgtacccatttgttgcactgtggcattactaaccgagatcatctaccaatgtcattatgcaggcagGTTCATTCCTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA
species | Zea mays |
transcript | GRMZM2G086805_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATTGGCAGEST: gi|29129751|gb|CB380455.1|CB380455
genomic: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATT----Ggtgagccttg ... atgcagg
EST: CTGATGGACCCCAGTAGGAG-NGGGCAGCCCGTTGGTTGAG-ATTGGCAG GTTCATTCCTGGG-GCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGEST: gi|28986940|gb|CB351384.1|CB351384
genomic: CTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATT----Ggtgagccttg ... atgcaggcagGTTCATTCCTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAG
EST: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATTGGCAGEST: gi|30087685|gb|CB885891.1|CB885891
genomic: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATT----Ggtgagccttg ... atgcagg
EST: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATTGGCAGEST: gi|32930934|gb|CF035746.1|CF035746
genomic: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATT----Ggtgagccttg ... atgcagg
EST: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATTGGCAG
genomic: CTCTCTGATGGACCCCAGTAGGAGCTGGGCAGCCCGTTGGTTGAGAATT----Ggtgagccttg ... atgcagg
gttgcactgtggcattactaaccgagatcatctaccaatgtcattatgcaggcagGTTCATTCCTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA
tactaac putative branch site (score: 16)
attactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacttctgttttggttcatactagaatgtatagatgtacccatttgttgcactgtggcattactaaccgagatcatctaccaatgtcattatgcaggcagGTTCATTCCTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - tgttttg
- - - - - - - - - - - - - - - - gatgtac
- - - - - - - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgtggc