1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgctatgcatgcacacatgttaatgtgattgatgctgcaatctttgcttcggtagaagaaccccgtttggttggttgaccctcgcgcttcttggcaatgcggcgcagCATCTACGGTCCAGTTCACGACGTGCGCATTCCCTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCAGAGACGGTGAAGCTCATCCTG
species | Zea mays |
transcript | GRMZM2G086614_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATTCCCTACCAGCAGAAGCGCATEST: gi|89247427|gb|DY619213.1|DY619213
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGgtatgctatg ... tgcggcgcagCATCTACGGTCCAGTTCACGACGTGCGCATTCCCTACCAGCAGAAGCGCAT
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATTCCCTACCAGCAGAAGCGCAT
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGgtatgctatg ... tgcggcgcagCATCTACGGTCCAGTTCACGACGTGCGCATTCCCTACCAGCAGAAGCGCAT
tagaagaaccccgtttggttggttgaccctcgcgcttcttggcaatgcggcgcagCATCTACGGTCCAGTTCACGACGTGCGCATTCCCTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCAGAGACGGTGAAGCTCATCCTG
ggttgac putative branch site (score: 12)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatgcatgcacacatgttaatgtgattgatgctgcaatctttgcttcggtagaagaaccccgtttggttggttgaccctcgcgcttcttggcaatgcggcgcagCATCTACGGTCCAGTTCACGACGTGCGCATTCCCTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCAGAGACGGTGAAGCTCATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA