1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaaaaaaataacaagcagtcaagctgcaccatatattattaattacgggttttgtctgtctaaaatcttaggtgatgtggtatttttggtgatttctagGCACCGGTGGACTGGCAGGTACGAGGCACATCTGTGGGACAACAGCTGCCGACGCGAAGGGCAGAGCCGCAAGGGCCGCCAAG
species | Zea mays |
transcript | GRMZM2G086573_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
acgggttttgtctgtctaaaatcttaggtgatgtggtatttttggtgatttctagGCACCGGTGGACTGGCAGGTACGAGGCACATCTGTGGGACAACAGCTGCCGACGCGAAGGGCAGAGCCGCAAGGGCCGCCAAG
gtctaaa putative branch site (score: 10)
tttct putative PPT
taaaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaaaaataacaagcagtcaagctgcaccatatattattaattacgggttttgtctgtctaaaatcttaggtgatgtggtatttttggtgatttctagGCACCGGTGGACTGGCAGGTACGAGGCACATCTGTGGGACAACAGCTGCCGACGCGAAGGGCAGAGCCGCAAGGGCCGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- aaaaaaa
- - - - - -acaagca
- - - - - - - - - - - -gctgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg