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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcatggctatgttgcaactccacaaaacttcactaatagtctgtctactacttgaagaatctttatatagtttttacttgatttatgttccactttcagGCAACATTAGGTTTTTTTGCTTTGCCAACAGAGCCCTCAAGCATTGTTGAGAGTCTCGTAACAAACCTAATTATTCTGTTAGGTGCCATCCTGCTTACAA

Basic information

species Zea mays
transcript GRMZM2G086093_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086093_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 3'ss of exon 8
--------gtctgcatggctatgttgcaactccacaaaa-cttcactaatagtctgtctactac--------ttgaagaatctttatatagtttttacttgatttatgttccactttcagGCAACATTAGGTTTTTTTGCTTTGCCAACAGAGCCCTCAAGCATTGTTGAGAGTCTCGTAACAAACCTAATTATTCTGTTAGGTGCCATCCTGCTTACAA
         | |||||  |  |  |||||| |||||||| |||  |||||| | || |||||          || ||    ||| ||||  |||| | ||| |||   ||| | |||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||| ||| |||||||||| |||||| ||||||| ||||| ||||| || |
gtttgcatctttgcatcacagtagtgcaacgccacaaaaactttgctaataatttgactactgtagtttcagttaaactgccttcatatgattttcatttgtttt---ttctattttcagGCAACACTAGGATTTTTTGCTTTGCCAACTGAGCCCTCAAACATTGTTGAGAGCCTCATAACAAACCTGATTATTTTGTTAGGGGCCATTCTGCTAACTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactacttgaagaatctttatatagtttttacttgatttatgttccactttcagGCAACATTAGGTTTTTTTGCTTTGCCAACAGAGCCCTCAAGCATTGTTGAGAGTCTCGTAACAAACCTAATTATTCTGTTAGGTGCCATCCTGCTTACAA
                               acttgat  putative branch site (score: 5)
                                           ttccactttc  putative PPT
             aatctttatatagttt  TA-rich tract