1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atatacttagttttctgcactctttttctgtatttcgtccaacttcatgtagagtctgttctcttctagcctcagttcttgtttctctctcatatggcagTGTTGCTCATTTTTTGGAATCGAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACTGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAA
species | Zea mays |
transcript | GRMZM2G086015_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAG TGTTGCTCATTTTTTGGAATCGAGAGGTATGTTGGAAGAGGCTCTTGAGATEST: gi|67024352|gb|CO453101.1|CO453101
genomic: GATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgatt ... catatggcagTGTTGCTCATTTTTTGGAATCGAGAGGTATGTTGGAAGAGGCTCTTGAGAT
EST: GATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAG TGTTGCTCATTTTTTGGAATCGAGAGGTATGTTGGAAGAGGCTCTTGAGAT
genomic: GATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgatt ... catatggcagTGTTGCTCATTTTTTGGAATCGAGAGGTATGTTGGAAGAGGCTCTTGAGAT
catgtagagtctgttctcttctagcctcagttcttgtttctctctcatatggcagTGTTGCTCATTTTTTGGAATCGAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACTGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAA
cctcagttcttgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatacttagttttctgcactctttttctgtatttcgtccaacttcatgtagagtctgttctcttctagcctcagttcttgtttctctctcatatggcagTGTTGCTCATTTTTTGGAATCGAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACTGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - ttttctg
- - - - - - -tctgcac
- - - - - - - - - - - - - - - - - - - - - cttcatg