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gtgagtcgcccttcccgttagcgtttgtgtttccttattcgtcttgtttgtggcgcgccgaatgggtttcgggatcacggaatttgtcgttgttcacgcgacgcgttatgacttacgcgcgtgcttgcttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCATCGTCGCGCTGGCCAAATGGAGGATCCTCAACAGGTTGCACGACCGGAA
species | Zea mays |
transcript | GRMZM2G085747_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|211274711|gb|FL015918.1|FL015918
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|211274712|gb|FL015919.1|FL015919
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|74238358|gb|DT646272.1|DT646272
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: TCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|29130557|gb|CB381261.1|CB381261
genomic: TCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|29130494|gb|CB381198.1|CB381198
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|149102281|gb|EE287658.2|EE287658
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|211384290|gb|FL369291.1|FL369291
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|211048980|gb|FL422995.1|FL422995
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|211016654|gb|FL375789.1|FL375789
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|211527375|gb|FL402913.1|FL402913
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCAEST: gi|211272913|gb|FL015917.1|FL015917
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCEST: gi|71437509|gb|DR818559.1|DR818559
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCC
EST: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTA TAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
genomic: CTTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGATTTAgtgagtcgcc ... ttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCA
ttgtcgttgttcacgcgacgcgttatgacttacgcgcgtgcttgcttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCATCGTCGCGCTGGCCAAATGGAGGATCCTCAACAGGTTGCACGACCGGAA
gacttac putative branch site (score: 2)
cttgcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgcccttcccgttagcgtttgtgtttccttattcgtcttgtttgtggcgcgccgaatgggtttcgggatcacggaatttgtcgttgttcacgcgacgcgttatgacttacgcgcgtgcttgcttcgttacagTAAACTCTTTCCGGTCGCTGGAGCACAATACCCGCGGCGAGCCTGACTCCATCGTCGCGCTGGCCAAATGGAGGATCCTCAACAGGTTGCACGACCGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT