1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgagtgcataaaatcacaaaagtttgtaaattgagtaattatattccagttatctgatgatagcaattttttgtatctaatagccttgactttctttcagCAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGACAGAAGAAATGGCACCTAACTTGCTAGAGAATGATATGGATCTACATTT
species | Zea mays |
transcript | GRMZM2G085602_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTCGACTATAGTGTGGATGTGGATAAGCGTAAAGGTATTTATTTGCAG CAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGAEST: gi|71429534|gb|DR810584.1|DR810584
genomic: CTGTCGACTATAGTGTGGATGTGGATAAGCGTAAAGGTATTTATTTGCAGgtcaatactg ... tttctttcagCAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGA
EST: AAGGTATTTATTTGCAG C-ATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGA
genomic: AAGGTATTTATTTGCAGgtcaatactg ... tttctttcagCAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGA
ccagttatctgatgatagcaattttttgtatctaatagccttgactttctttcagCAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGACAGAAGAAATGGCACCTAACTTGCTAGAGAATGATATGGATCTACATTT
ccttgactttctttc CT-rich tract
aattttttgtatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtgcataaaatcacaaaagtttgtaaattgagtaattatattccagttatctgatgatagcaattttttgtatctaatagccttgactttctttcagCAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGACAGAAGAAATGGCACCTAACTTGCTAGAGAATGATATGGATCTACATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA