1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgctgcattcctgctcgctgctactctcgaattcctcgcttggttttaattcccagcccaatccaaaaagagaacgaaagcaaaaaaaaaaaaaaaaaaaaaatgaaaccggttcgtgtcgttgtcgctgtcagGTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGCCCAACATGGAAAAG
species | Zea mays |
transcript | GRMZM2G085467_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGG GTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGEST: gi|76281063|gb|DV020631.1|DV020631
genomic: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGGgttcgctgca ... tcgctgtcagGTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTG
EST: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGG GTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGEST: gi|149085916|gb|EE175444.2|EE175444
genomic: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGGgttcgctgca ... tcgctgtcagGTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTG
EST: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGG GTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGEST: gi|211103379|gb|FL434747.1|FL434747
genomic: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGGgttcgctgca ... tcgctgtcagGTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTG
EST: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGG GTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTG
genomic: TCCGCGCCAAGCGCGGGTGCGCCACCCACCCGCGCAGCATCGCCGAGCGGgttcgctgca ... tcgctgtcagGTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTG
gcaaaaaaaaaaaaaaaaaaaaaatgaaaccggttcgtgtcgttgtcgctgtcagGTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGCCCAACATGGAAAAG
aaaaaaaaaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgctgcattcctgctcgctgctactctcgaattcctcgcttggttttaattcccagcccaatccaaaaagagaacgaaagcaaaaaaaaaaaaaaaaaaaaaatgaaaccggttcgtgtcgttgtcgctgtcagGTGAGGAGGACGAAGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGCCCAACATGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA