1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttcacactaaaaagctgtccagaagctcatacaaacagggctgattcaagagcttctttccttgctttgagtattgatagatactgctagttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGCCAAGAGAGGGCACTGCAACTAAGGCTGCACTTTTCTTCTGCCATGGAT
species | Zea mays |
transcript | GRMZM2G085438_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|93016345|gb|EB641865.1|EB641865
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|71307182|gb|DR789758.1|DR789758
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|149076326|gb|EE164940.2|EE164940
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|78123599|gb|DV541983.1|DV541983
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|71426297|gb|DR807347.1|DR807347
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|211083467|gb|FK983603.1|FK983603
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|78082086|gb|DV510498.1|DV510498
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|78076593|gb|DV505027.1|DV505027
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|93015877|gb|EB641397.1|EB641397
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|37420223|gb|CF647800.1|CF647800
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|71439017|gb|DR820067.1|DR820067
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|78106711|gb|DV525129.1|DV525129
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|50333020|gb|CO528146.1|CO528146
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|148973073|gb|EE024135.2|EE024135
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGEST: gi|50329341|gb|CO524467.1|CO524467
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
EST: ATGGCTCACAATGAAATCCAGATGGAAGAG AATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
genomic: ATGGCTCACAATGAAATCCAGATGGAAGAGgtacgggcgt ... gttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTG
ttcaagagcttctttccttgctttgagtattgatagatactgctagttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGCCAAGAGAGGGCACTGCAACTAAGGCTGCACTTTTCTTCTGCCATGGAT
tattgat putative branch site (score: 3)
tattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcacactaaaaagctgtccagaagctcatacaaacagggctgattcaagagcttctttccttgctttgagtattgatagatactgctagttactgtagAATTACGAGACCAATTCAAAGGGCGTTGAAATATTCTGGAAGAGTTGGCTGCCAAGAGAGGGCACTGCAACTAAGGCTGCACTTTTCTTCTGCCATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
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