1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacaacctctattgcctctgcctcctgtttatctctaactgtacctacatttgttgcaccaaaccctaataatttttgctgaacaatcatgctgacttattcctcttcttcattgtttgtgtattcttccaaatcttcagTTGTCCATTTTGTCGAAAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAACTGCATTTTGAAGCTGTCATTCTTCATGCACATGAACAGTTTTGTTGTT
species | Zea mays |
transcript | GRMZM2G085000_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAATTTGAAGG TTGTCCATTTTGTCG-AAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAAEST: gi|211383632|gb|FL454532.1|FL454532
genomic: GAATTTGAAGGgtacaacctc ... aaatcttcagTTGTCCATTTTGTCGAAAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAA
EST: GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG TTGTCCATTTTGTCGAAAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAAEST: gi|9255165|gb|BE345633.1|BE345633
genomic: GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGGgtacaacctc ... aaatcttcagTTGTCCATTTTGTCGAAAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAA
EST: CAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG TTGTCCATTTTGTCG-AAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAA
genomic: CAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGGgtacaacctc ... aaatcttcagTTGTCCATTTTGTCGAAAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAA
atcatgctgacttattcctcttcttcattgtttgtgtattcttccaaatcttcagTTGTCCATTTTGTCGAAAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAACTGCATTTTGAAGCTGTCATTCTTCATGCACATGAACAGTTTTGTTGTT
tgctgac putative branch site (score: 2)
ttcttcca putative PPT
acttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacctctattgcctctgcctcctgtttatctctaactgtacctacatttgttgcaccaaaccctaataatttttgctgaacaatcatgctgacttattcctcttcttcattgtttgtgtattcttccaaatcttcagTTGTCCATTTTGTCGAAAGGTGAATACGTCCAGCTTCCTGCAAGTCTGCAACTGCATTTTGAAGCTGTCATTCTTCATGCACATGAACAGTTTTGTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG