1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgaatttattcatatttctttcattctaagctattgccatatcatggaaatcacacgtctcacgactagatgcagttgtggtatagatagatctgtaaagtttgcttgttaattagttattagagcagtacgcaactacaaacataagttcctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG
species | Zea mays |
transcript | GRMZM2G085000_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAG CTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAAEST: gi|211469259|gb|FL411595.1|FL411595
genomic: TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAGgtgaatttat ... ctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
EST: ACCATCGGACCAATATGCGCTTGAATTCGGAG CTTGGAAGGTGAASGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAAEST: gi|60394591|gb|DN227461.1|DN227461
genomic: ACCATCGGACCAATATGCGCTTGAATTCGGAGgtgaatttat ... ctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
EST: TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAG CTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
genomic: TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAGgtgaatttat ... ctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
tgttaattagttattagagcagtacgcaactacaaacataagttcctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG
tgttaat putative branch site (score: 3)
ttcctttttgt putative PPT
attagttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatttattcatatttctttcattctaagctattgccatatcatggaaatcacacgtctcacgactagatgcagttgtggtatagatagatctgtaaagtttgcttgttaattagttattagagcagtacgcaactacaaacataagttcctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG