1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactaagctgaatcgaatttgtcttcaattgcagttgaattgattttcctcggtacaaaatatccgactatgaaagttagtaaaaacagtctttgaagtgatagtatgtttaactgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTGCTTGACCATTGCCAGGAAGATATGGAGTTTATGGTGAAAAATTATGATA
species | Zea mays |
transcript | GRMZM2G083836_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTGEST: gi|20300675|gb|BQ163618.1|BQ163618
genomic: GAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTG
EST: TGGCAGAGTTTTGGATGGGTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTACAGGACCTTTGCAAGTGGCTGEST: gi|16137323|gb|BI894188.1|BI894188
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTG
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAA-TATGTACAGTACCTTTGCAAGTGGCTGEST: gi|19770139|gb|BQ034860.1|BQ034860
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTG
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTGEST: gi|61119073|gb|DN560034.1|DN560034
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTG
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTGEST: gi|32929176|gb|CF033988.1|CF033988
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTG
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTAEST: gi|7238163|gb|AW573385.1|AW573385
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTA
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTGEST: gi|32929947|gb|CF034759.1|CF034759
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTG
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGCACATGAACTGTGCAGAAAAATATGTEST: gi|32850051|gb|CD989732.1|CD989732
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATG-ACATGAACTGTGCAGAAAAATATGT
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTAEST: gi|32929849|gb|CF034661.1|CF034661
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTA
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATCACATGAACTGTGCAGAAAAGATATGTEST: gi|32929551|gb|CF034363.1|CF034363
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAA-ATATGT
EST: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAG GATGACATGAACTGTGCAGAAAAATATGTAC
genomic: TGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagc ... tgttctgcagGATGACATGAACTGTGCAGAAAAATATGTAC
atgaaagttagtaaaaacagtctttgaagtgatagtatgtttaactgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTGCTTGACCATTGCCAGGAAGATATGGAGTTTATGGTGAAAAATTATGATA
gtttaac putative branch site (score: 389)
ctgttct CT-rich tract
ttagtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaagctgaatcgaatttgtcttcaattgcagttgaattgattttcctcggtacaaaatatccgactatgaaagttagtaaaaacagtctttgaagtgatagtatgtttaactgttctgcagGATGACATGAACTGTGCAGAAAAATATGTACAGTACCTTTGCAAGTGGCTGCTTGACCATTGCCAGGAAGATATGGAGTTTATGGTGAAAAATTATGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA