1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacatccttactctttcgaaccgaccctccgcctgcctttcacatgccctaattcgcggaatcaaaaaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
species | Zea mays |
transcript | GRMZM2G083346_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCA CTTTCACTTGGACCGCGCCGCATCGCTGCCGTACTTCCTGGAGAAGEST: gi|149087996|gb|EE177212.2|EE177212
genomic: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCAgtaacatcct ... aaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
EST: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCA CTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAGEST: gi|148955806|gb|EC901491.2|EC901491
genomic: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCAgtaacatcct ... aaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
EST: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCA CTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAGEST: gi|71420449|gb|DR805097.1|DR805097
genomic: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCAgtaacatcct ... aaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
EST: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCA CTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAGEST: gi|211114031|gb|FL096536.1|FL096536
genomic: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCAgtaacatcct ... aaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
EST: TACTTCGACGAAATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCA CTTTCACTTGGACCACGCCGCATCGCTACCGTACTTCCTGGAGAAG
genomic: TACTTCGACGAGATCGATCCGTCCGCCATAGACGTCCTCCTCATCACCCAgtaacatcct ... aaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
cgaccctccgcctgcctttcacatgccctaattcgcggaatcaaaaaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
ccctaat putative branch site (score: 8)
aatcaaaaaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatccttactctttcgaaccgaccctccgcctgcctttcacatgccctaattcgcggaatcaaaaaaatcacagCTTTCACTTGGACCACGCCGCATCGCTGCCGTACTTCCTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA