Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC

Basic information

species Zea mays
transcript GRMZM2G083076_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g11570.1 (Oryza sativa), 3'ss of exon 1
taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatc---accttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
  || ||| |   | || | |    |    | |  |      ||||| | | ||| |  | |    ||||   ||||||| | |   | |  |||| |||||||| || |||||  |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |
--aaatttactcttgttgtttgaaccttgcttaggtttgtaactgctgtgt-tgtgccttctgcgtttttgcaattctaacagcggcatccattctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGACGAAGATCAATCTTCTCAAACTTGCGCATTTCGCGGTCATCGCTTCGC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g32800.1 (Oryza sativa), 3'ss of exon 1
---taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtc-ttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
      | | |  |||| ||  |||  | |||  ||   ||  ||||     || |  |||  |  |   |  |   |||||||   ||    |||| | |||||| || ||||| ||||| ||||||||||||||||||||| |||| || ||||| ||||| ||||| ||||| |||||||| || ||||| || ||||| |
tagctgaatgtttcaatcttggattacttcaa--caac-catatgcttagggtttta-actgatgggcaatcctgcaattctaacggcattcattctcccacagACTGGCGACACCATCATACAGCTCTACAACAATTTCATCTCTGACTTCGAGACGAAGATCAATCTTCTCAAACTTGCCCACTTCGCGGTCATCGCTTCAC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G34310.2 (Glycine max), 3'ss of exon 2
-------taaagtttgccaattttata---ttgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGAC-CAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
       |  | |      || | | |   |  |  ||     |   ||      | |  |    |  |||     ||||    || || | || |       |    | |  | ||   || |   | |  |||   |    |   |||   | ||  |||| | |||       ||  |      || ||                   
gtgatgctttaatacaattatatcacaatttcatcacagactttgagacgaaaatcaaccttctcaagcttgcacattttgctgttatagTTTCTCGGCAGTATTCTGAAAAAGAAGCTGCTGTTGGTTA--TCTTGGAGGGGTCATTCAGAAACTTCAAGACACTAGAGAGCAGCGCATAGAAGAACCTAT-------------------

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G01460.1 (Glycine max), 3'ss of exon 1
taaagtttgccaattttatatt-gttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
| |  |||    |    ||||| || |   |  ||  ||  || |  ||||   ||     | | ||| ||       |  |    ||| |   | | ||| |||| ||  |  | || ||  | ||  ||||||||||||| || ||||||||||| || || || ||||||||||| ||||| || || |||| |||||
tgacttttattgaaacaatatttgtactctgatatg-catgtgttcttattatagtttaaatgtatctgtttcacaaatggttcttcctataaattttcagGCCGGTGATGCATTAATACAATTATATCACAATTTCATCACAGACTTTGAGACCAAAATCAACCTTCTCAAGCTTGCGCATTTCGCTGTTATAGTTTCTC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
taaagtttgccaattttatattgttccaagtc-atttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
    |  | | | |   | | | |||  | ||   |   | |  |  ||||   ||     ||| | | ||          |    ||| |   | | ||| | || ||  || | || ||  | ||  ||||||||||||| || |||||||| || || || || ||||||||||| |||||||| || |||| |||||
-gttgacttctattgaaacaatattcatactctgatgtgcatattcttattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT5G45620.2 (Arabidopsis thaliana), 3'ss of exon 1
-taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttctt-ctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
 ||   |||     || || ||   |     |   ||| |  | |  | | |||| |   |    | | | ||  || |||||| |  |||| |   | ||| | || ||  || | |||||| ||||  |||||||||||||||| |||||||| ||||| ||||| || |||||||| |||||||| ||| | |  ||||
ttaggttttagggtttatagatcaattttgattgcttc-caagtttttgtgtctg-atcttaacctgtgtcattgttataatataattttttttcatttcagGCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTTGCTGTGGTGGTCTCTC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT4G19006.1 (Arabidopsis thaliana), 3'ss of exon 1
taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttt--tgtcttttatgattctaat-atcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
   | | |   |  |      |   | ||   | |   | |       |||    | |  ||  || | | | |    ||  | ||   | |    | | ||| | |||||  || | || ||||| |||||||||||||||||||| |||||||| | ||| ||||| || |||||||| ||||| || ||  |||  || |
-cgaatattttagctcagagatacccaaaa--actcagctttacaaggtttacagatttgttaatgacgtgtttccccctgtttatgttcataatctttgcagGCTGGAGATGCTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGAAGCTTGCGCATTTCGCTGTTGTAGTCTCCC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: PP1S66_117V6.1 (Physcomitrella patens), 3'ss of exon 1
taaagtttgccaattttatattg---ttccaagtcatttcacctgctgctatttctg-tactcttttgtcttttatgattctaatatcacctttt---cttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
       ||   ||||||||||    ||   | | | ||     | |  ||| | || ||| || |||     | |  |  | ||   |  || |   |   | ||| | ||||||||  |  ||||||| ||| | || || ||    || || ||||||||||| |||||||| ||||| || ||||||||||| || |  ||  
-------tgatcattttatatttatttttttatttagttattagggttttatgtgtgctacactgttgggaaatgttgtgttgatgggattttatggacgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGACCAAGATCAATCTGCTTAAGCTGGCTCATTTTGCGGTCATTGTATCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211037319|gb|FK949903.1|FK949903
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119855|gb|FL011675.1|FL011675
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|21987705|gb|BQ779233.1|BQ779233
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119854|gb|FL011674.1|FL011674
EST:     ACCAGCTCACCCTCAARCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTYTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148930111|gb|EC872433.2|EC872433
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120638|gb|FL011688.1|FL011688
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTG
EST: gi|211120634|gb|FL011684.1|FL011684
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148972928|gb|EE023946.2|EE023946
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119858|gb|FL011678.1|FL011678
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|71325798|gb|DR799578.1|DR799578
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148994797|gb|EE034244.2|EE034244
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120633|gb|FL011683.1|FL011683
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119860|gb|FL011680.1|FL011680
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGA
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGA
EST: gi|148960655|gb|EE011285.2|EE011285
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119853|gb|FL011673.1|FL011673
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|149073975|gb|EE162304.2|EE162304
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120637|gb|FL011687.1|FL011687
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148999898|gb|EE036942.2|EE036942
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|26558774|gb|CA831009.1|CA831009
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|78103810|gb|DV522238.1|DV522238
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|22472868|gb|BU037348.1|BU037348
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|87156736|gb|DY401525.1|DY401525
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|149111478|gb|EE294982.2|EE294982
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148960706|gb|EE011347.2|EE011347
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|22473039|gb|BU037504.1|BU037504
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120632|gb|FL011682.1|FL011682
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|149110373|gb|EE190383.2|EE190383
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCCCTGATTT
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTT
EST: gi|110220049|gb|EC901947.1|EC901947
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120635|gb|FL011685.1|FL011685
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATSATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119859|gb|FL011679.1|FL011679
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119857|gb|FL011677.1|FL011677
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
                             ttctaat  putative branch site (score: 2)
                                   tatcaccttttcttct  CT-rich tract
                     ttttatgattctaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - -gctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattct