1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtttcaccatcaataacatttgaactgtaaaacaaaacttcagtttaaaagttcatctgacttattgactattctatatcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATT
species | Zea mays |
transcript | GRMZM2G083076_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCCATTCA-GCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|78180907|gb|DV551280.1|DV551280
genomic: CTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTC-ATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATCCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|148960655|gb|EE011285.2|EE011285
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|148967525|gb|EE018769.2|EE018769
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|149073975|gb|EE162304.2|EE162304
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|149111478|gb|EE294982.2|EE294982
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|148956859|gb|EC902774.2|EC902774
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTTEST: gi|12047287|gb|BF729426.1|BF729426
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATCCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|8401231|gb|BE056865.1|BE056865
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: ATCTGG-CTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|78103810|gb|DV522238.1|DV522238
genomic: ATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: CTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTNCA-GCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAEST: gi|116829258|gb|EC866181.1|EC866181
genomic: CTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATT-CAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTA
EST: TATCTAGGCCTAC-CAACTGTGGAGTCTCTATACTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATEST: gi|148930111|gb|EC872433.2|EC872433
genomic: TATCT-GGCCTACACAACTGTGGAGTCTCTAT-CTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTAT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTTT
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttgtcagGACTTGGCTTTTGATCTTT
caaaacttcagtttaaaagttcatctgacttattgactattctatatcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATT
tattgac putative branch site (score: 2)
tcttgtc putative PPT
tttaaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcaccatcaataacatttgaactgtaaaacaaaacttcagtttaaaagttcatctgacttattgactattctatatcttgtcagGACTTGGCTTTTGATCTTTCTCTAGCAGCCTTGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA