1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcgctccagacttataattactattaggttgcatgctgtttatttgcatctcaagtgcttcacccttataataaaaacttactctctttcttttttccagATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTCTGGAGGAGAACTCATTTAGAGGAAGAACTGCCGACTTTTTTTACATGCT
species | Zea mays |
transcript | GRMZM2G082976_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTCEST: gi|21390024|gb|BQ528073.1|BQ528073
genomic: CTACGAGATCTGGCGCCTCGTCACCAACTTTCTCTACTTCCGCAAGATGGgtatgcgatc ... ttttttccagATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTC
EST: CTACGAGATCTGGCGCCTCGTCACCAACTTTCTCTACTTCCGC-AGATGG ATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTCEST: gi|26457330|gb|CA828913.1|CA828913
genomic: CTACGAGATCTGGCGCCTCGTCACCAACTTTCTCTACTTCCGCAAGATGGgtatgcgatc ... ttttttccagATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTC
EST: CTACGAGATCTGGCGCCTCGTCACCAACTTTCTCTACTTCCGCAAGATGG ATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTC
genomic: CTACGAGATCTGGCGCCTCGTCACCAACTTTCTCTACTTCCGCAAGATGGgtatgcgatc ... ttttttccagATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTC
gcatctcaagtgcttcacccttataataaaaacttactctctttcttttttccagATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTCTGGAGGAGAACTCATTTAGAGGAAGAACTGCCGACTTTTTTTACATGCT
aacttac putative branch site (score: 304)
cttactctctttcttt CT-rich tract
ttataataaaaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgctccagacttataattactattaggttgcatgctgtttatttgcatctcaagtgcttcacccttataataaaaacttactctctttcttttttccagATTTGGATTTTCTGTTCCACATGTTTTTTCTCGCACGATACTGCAAGCTTCTGGAGGAGAACTCATTTAGAGGAAGAACTGCCGACTTTTTTTACATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- gctccag
- - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - -ttgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa