1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...gacacagttccttagtactattttatttagtttaagcctacacatcctagatttggcttgctgattagtttatttgtgtgctaatgatttgctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGATTGCGTCTCCTTAAAATATTT
species | Zea mays |
transcript | GRMZM2G082855_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGT GGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGAEST: gi|148934014|gb|EC878019.2|EC878019
genomic: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGTgtgagtggat ... gctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
EST: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGT GGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGAEST: gi|148940443|gb|EC885241.2|EC885241
genomic: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGTgtgagtggat ... gctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
EST: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGT GGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGAEST: gi|149079906|gb|EE168912.2|EE168912
genomic: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGTgtgagtggat ... gctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
EST: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGT GGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGAEST: gi|148941048|gb|EC885905.2|EC885905
genomic: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGTgtgagtggat ... gctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
EST: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGT GGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGAEST: gi|149096378|gb|EE182110.2|EE182110
genomic: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGTgtgagtggat ... gctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
EST: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGT GGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGAEST: gi|148957491|gb|EC903572.2|EC903572
genomic: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGTgtgagtggat ... gctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
EST: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGT GGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
genomic: GGAGGGGAGATCTCGCCGGCTATAGGGCAGCTCAAGAGCCTACAGTTCGTgtgagtggat ... gctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGA
cctagatttggcttgctgattagtttatttgtgtgctaatgatttgctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGATTGCGTCTCCTTAAAATATTT
tgctaat putative branch site (score: 138)
tttgctc putative PPT
tgattagtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacacagttccttagtactattttatttagtttaagcctacacatcctagatttggcttgctgattagtttatttgtgtgctaatgatttgctcgtgcagGGATCTCAAGCTGAACAAGCTCACAGGCCAAATCCCAGATGAGATTGGGGATTGCGTCTCCTTAAAATATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG