1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctcaggtggcttgctagcttaacacattcatgataacattagttactcaagccttttaccttttatttacagttacactgtcatgcctgtcttttatagGATTGCCTAGGCAACCTTCATATACTACTGGATTTGGGACTGCTTTAAATATAGAGACACTTGTTGCTGTCGCGGAACAAAGAGATACACCAATTGAG
species | Zea mays |
transcript | GRMZM2G082573_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGAGGAGCTTACTATGGATGATATCGTGCCGGTCAAGACCAACAAG GATTGCCTAGGCAACCTTCATATACTACTGGATTTGGGACTGCTTTAAATA
genomic: CCAAGGAGGAGCTTACTATGGATGATATCGTGCCGGTCAAGACCAACAAGgtatggtttc ... tcttttatagGATTGCCTAGGCAACCTTCATATACTACTGGATTTGGGACTGCTTTAAATA
actcaagccttttaccttttatttacagttacactgtcatgcctgtcttttatagGATTGCCTAGGCAACCTTCATATACTACTGGATTTGGGACTGCTTTAAATATAGAGACACTTGTTGCTGTCGCGGAACAAAGAGATACACCAATTGAG
cctgtctttt CT-rich tract
ttttaccttttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcaggtggcttgctagcttaacacattcatgataacattagttactcaagccttttaccttttatttacagttacactgtcatgcctgtcttttatagGATTGCCTAGGCAACCTTCATATACTACTGGATTTGGGACTGCTTTAAATATAGAGACACTTGTTGCTGTCGCGGAACAAAGAGATACACCAATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - tgctagc
- - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcctg