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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgtttttgaacggatagctattgcttgtccagttgactatccagtttagttaatttatacctgaacatacatatattgttgttatgggttctctggtgacatgacttttacttttgtatagAATGGTGTCATGTCTTCGATAAAGCCCCAGCAGGTTACATATGTTGTACCTGGTATCATGAATTTTGACTATTCAAAAATAGACGAATTTCTTGAGAAAA

Basic information

species Zea mays
transcript GRMZM2G082260_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082260_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g62440.1 (Oryza sativa), 3'ss of exon 2
gtcgtttttgaacggatagctattg----cttgtc------cagttgactatccagtt-tagttaatttatacctgaacatacatatattgttgt---------tatgggttctctggt-gacatgacttttacttttgtatagAATGGTGTCATGTCTTCGATAAAGCCCCAGCAGGTTACATATGTTGTACCTGGTATCATGAATTTTGACTATTCAAAAATAGACGAATTTCTTGAGAAAA
   || |   ||   | |  || ||     |||||      || | || ||  || |  || | | | | |  || | ||||  | | |  ||||         ||||  |||| |  | |||||  || ||   |||||| |||||||| |  ||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||   |  |||||| |||||| |||||| |  ||||| 
---gtatcaaaagaaacaattactgtagttttgtctatattcaatagagtaaacattgataatgagtatgtttcttagcatatgtttgtcattgtctatttgtctatgatttctttcattgacatagctattctatttgtacagAATGGTATATTGTCTTCTATAAAACCCCAGCAGGTTACATATGTTATACCTGGTATCATCAATTACAATCATTCAAGAATAGATGAATTTATCAAGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacatatattgttgttatgggttctctggtgacatgacttttacttttgtatagAATGGTGTCATGTCTTCGATAAAGCCCCAGCAGGTTACATATGTTGTACCTGGTATCATGAATTTTGACTATTCAAAAATAGACGAATTTCTTGAGAAAA
                                      cttttactttt  CT-rich tract
                                       ttttacttttgtata  TA-rich tract