Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcaacaattgctttcattgatttacttgttatgtatgatttcccccctattgcacctgctgacaagcgtataatttaccctgctatgttctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTCTTCGTCCCATTGTTCAATGCCAGACTCTCAAGTACAACATGAAGTCAAG

Basic information

species Zea mays
transcript GRMZM2G081102_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
----------------------------ctcaaca--attgctttcattgatttacttgtta-tgtatgatttcccccctattgcacctgctgacaagcgta--taattt--accctgctatgttctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTCTTCGTCCCATTGTTCAATGCCAGACTCTCAAGTACAACATGAAGTCAAG
                             | ||||   ||||| | ||| ||| |    | | | | | ||        |     |   |   |  | | |   | ||||  || | |   ||     | | |||| || || ||||||||||| ||||| |||||| | || |||||||| |||||  | || ||||||||  |||||||||| || |||||||||||    ||
gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 3'ss of exon 2
ctcaacaattgctttcattgatttacttgttatgtatgatttcccccctattgcacctgctgacaagcgtataatttaccctgctatgttctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTCTTCGTCCCATTGTTCAATGCCAGACTCTCAAGTACAACATGAAGTCAAG
 | |  | | |   |        | ||  |  |||    ||||      | |  ||      |      |     |||   || ||||||   |   ||||  | |||||||||||||||||||| ||||| || |||||| |||| ||||| || ||  |||| ||  | |||||||| |||||||||||||||   ||
gttagtagtagtaatgtcaacacttctgatattgtcatgtttcgttttaagtttacactacaatctctttgggtcttattatgttatgttg--tacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAG

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 2
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------ctcaacaattgctttcattgatttacttgttatgt-------atgatttcccccc--tattgcacctgctgacaa-gcgtataatttaccctgctatgttctctgtgc-------agCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTCTTCGTCCCATTGTTCAATGCCAGACTCTCAAGTACAACATGAAGTCAAG
                          ||    || |||   ||  || ||  |||  |       ||||||      |  |||    | |||| |    | |      ||  | ||  ||||    | | |       |||  | |||||||||||||||||||| |||||||| || ||  |||| || ||||| || ||||| ||  | || ||||| |||||||| |||||    ||
gtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagttggtcataatgattctgtttcattatcaagcttgcttattctgtgctcgcattttcttgacatgtctgttataccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACTTCGACCTATTGTCCATGGGCAAACTCTGAAGTACAATATGAAAGTTAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345778|gb|DN212751.1|DN212751
EST:     AACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: AACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|101398368|gb|EB821056.1|EB821056
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|26557765|gb|CA830000.1|CA830000
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|76287867|gb|DV027435.1|DV027435
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211419059|gb|FL425549.1|FL425549
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|31909999|gb|CD651202.1|CD651202
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211029288|gb|FL369418.1|FL369418
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211112079|gb|FL283004.1|FL283004
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32909677|gb|CF014489.1|CF014489
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|13150746|gb|BG321068.1|BG321068
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|60400975|gb|DN233782.1|DN233782
EST:     GCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: GCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211485701|gb|FL425128.1|FL425128
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211466704|gb|FL410764.1|FL410764
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|76012272|gb|DT939442.1|DT939442
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|13558997|gb|BG550352.1|BG550352
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|76287200|gb|DV026768.1|DV026768
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211153124|gb|FL378534.1|FL378534
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|31558555|gb|CD527767.1|CD527767
EST:     GTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: GTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|6918394|gb|AW399924.1|AW399924
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|6526841|gb|AW216110.1|AW216110
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32913244|gb|CF018056.1|CF018056
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32864594|gb|CF004276.1|CF004276
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|60351013|gb|DN217986.1|DN217986
EST:     TCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|71441294|gb|DR822344.1|DR822344
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|28873814|gb|CB329752.1|CB329752
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|60397725|gb|DN230541.1|DN230541
EST:     ACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: ACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|71441293|gb|DR822343.1|DR822343
EST:     AACCAGCCCG-CCGCCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: AACCAGCCCGCCCG-CAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32913278|gb|CF018090.1|CF018090
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|71300904|gb|DR786481.1|DR786481
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|19351348|gb|BM895880.1|BM895880
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211518135|gb|FL378867.1|FL378867
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211085123|gb|FL402165.1|FL402165
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|29946685|gb|CB816274.1|CB816274
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|71307562|gb|DR790002.1|DR790002
EST:     GTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: GTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211141936|gb|FL417375.1|FL417375
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|29945649|gb|CB815747.1|CB815747
EST:     AGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: AGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|67030644|gb|CO459393.1|CO459393
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|37421080|gb|CF648236.1|CF648236
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211266078|gb|FL031057.1|FL031057
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|29544598|gb|CB604978.1|CB604978
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|29129925|gb|CB380629.1|CB380629
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|28930879|gb|CB334240.1|CB334240
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32912920|gb|CF017732.1|CF017732
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32912809|gb|CF017621.1|CF017621
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|28930908|gb|CB334269.1|CB334269
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32804728|gb|CD956964.1|CD956964
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211112080|gb|FL283005.1|FL283005
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|31909997|gb|CD651201.1|CD651201
EST:     GCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: GCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|60340081|gb|DN207054.1|DN207054
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211314895|gb|FL369685.1|FL369685
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|31558556|gb|CD527768.1|CD527768
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|13150194|gb|BG320516.1|BG320516
EST:     TGTCAAGACATGGTTCAMCCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|71332917|gb|DR803481.1|DR803481
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|30704469|gb|CD058534.1|CD058534
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|28910211|gb|CB331324.1|CB331324
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211112082|gb|FL283007.1|FL283007
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATGCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|28987522|gb|CB351675.1|CB351675
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|60395719|gb|DN228589.1|DN228589
EST:     CATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: CATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|15589508|gb|BI674124.1|BI674124
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|211351235|gb|FL411969.1|FL411969
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|20508168|gb|BQ279920.1|BQ279920
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32908172|gb|CF012985.1|CF012985
EST:     TGTCAAGGCATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|32855685|gb|CD995366.1|CD995366
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
EST: gi|78082165|gb|DV510577.1|DV510577
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcat ... ctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctattgcacctgctgacaagcgtataatttaccctgctatgttctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTCTTCGTCCCATTGTTCAATGCCAGACTCTCAAGTACAACATGAAGTCAAG
            tgctgac  putative branch site (score: 2)
                                         tgttctct  putative PPT
                        tataattta  TA-rich tract