1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taggttttacttgttgcgtcctttgcgttttttttttctttgtgagatggagtttgttgtttcacctggtgcaggtcgctaactgttgttctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGACAGGAGGGATGCGGAGGATGCTATTCGTGATCTAGATG
species | Zea mays |
transcript | GRMZM2G080930_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211470387|gb|FL342153.1|FL342153
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211047373|gb|FL359874.1|FL359874
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTRTTGATTTTKACGAEST: gi|211158830|gb|FL334283.1|FL334283
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211205317|gb|FL316783.1|FL316783
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211416748|gb|FL321413.1|FL321413
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211310251|gb|FL338861.1|FL338861
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211055147|gb|FL320204.1|FL320204
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211072623|gb|FL332514.1|FL332514
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGAEST: gi|211091140|gb|FL328973.1|FL328973
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
EST: ACTTCTGGGGAACTCGAACATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG TGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
genomic: ACTTCTGGGGAACTCGAAGATGAGTTCCGCGTGTTTGGAGTTCTGCGAAGgtcacttttt ... ctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGA
gatggagtttgttgtttcacctggtgcaggtcgctaactgttgttctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGACAGGAGGGATGCGGAGGATGCTATTCGTGATCTAGATG
cgctaac putative branch site (score: 2)
ttgttctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggttttacttgttgcgtcctttgcgttttttttttctttgtgagatggagtttgttgtttcacctggtgcaggtcgctaactgttgttctcaatgcagTGTTTGGATTGCACGTAAACCACCTGGCTTTGCATTTATTGATTTTGACGACAGGAGGGATGCGGAGGATGCTATTCGTGATCTAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG