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gtaatgccccgctcggtattgctgtttcgtcatgtgtattttcattgatgatttgaagatgggagttctaacataaacgtgcgtttgtggcatcgttcaagttgttgcaacttatttttcccgtgtcaaatttcagGGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGTGACTGTCCAGGTCATTTCGGCTACTTGAAGCTCGCGCTTCCAGTTTTTA
species | Zea mays |
transcript | GRMZM2G080176_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGACCGCGACATGACGCCGGTTCCCAATGGGTTGCTCGACCCGCGAATG GGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGTEST: gi|32805561|gb|CD957795.1|CD957795
genomic: ATGACCGCGACATGACGCCGGTTCCCAATGGGTTGCTCGACCCGCGAATGgtaatgcccc ... caaatttcagGGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGT
EST: ACGACCGCGACATGACGCCGGTTCCCAATGGGTTGCTCGACCCGCGAATG GGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGCGAATTTAGTEST: gi|211159635|gb|FL160662.1|FL160662
genomic: ATGACCGCGACATGACGCCGGTTCCCAATGGGTTGCTCGACCCGCGAATGgtaatgcccc ... caaatttcagGGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGT
EST: ATGACCGCGACATGACGCCGGTTCCCAATGGGTTGCTCGACCCGCGAATG GGAATCC-GACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGTEST: gi|86474903|gb|DY241273.1|DY241273
genomic: ATGACCGCGACATGACGCCGGTTCCCAATGGGTTGCTCGACCCGCGAATGgtaatgcccc ... caaatttcagGGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGT
EST: ATGACCGCGACATGACGCCGGTTCCCAGTGGGTTGCTCGACCCGCGAATG GGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCGTGGTGAATTTAGT
genomic: ATGACCGCGACATGACGCCGGTTCCCAATGGGTTGCTCGACCCGCGAATGgtaatgcccc ... caaatttcagGGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGT
cgtttgtggcatcgttcaagttgttgcaacttatttttcccgtgtcaaatttcagGGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGTGACTGTCCAGGTCATTTCGGCTACTTGAAGCTCGCGCTTCCAGTTTTTA
aacttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgccccgctcggtattgctgtttcgtcatgtgtattttcattgatgatttgaagatgggagttctaacataaacgtgcgtttgtggcatcgttcaagttgttgcaacttatttttcccgtgtcaaatttcagGGAATCCCGACTAAGAGAGGCAAATGCAATACCTGCCATGGTGAATTTAGTGACTGTCCAGGTCATTTCGGCTACTTGAAGCTCGCGCTTCCAGTTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC